1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtttaacttttgaatacttgccgcactggggtctagggtctgattaaggaggaggtagatgatagcttgctctaattggttacttgtggcgtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAATTCATATTGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTG
species | Zea mays |
transcript | GRMZM2G131324_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAG TCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAEST: gi|32931459|gb|CF036271.1|CF036271
genomic: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAGgtaagtcccc ... gtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACA
EST: GGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAG TCAACTTATTACTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAEST: gi|211241979|gb|FL117176.1|FL117176
genomic: GGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAGgtaagtcccc ... gtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACA
EST: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAG TCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACCEST: gi|20507496|gb|BQ279657.1|BQ279657
genomic: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAGgtaagtcccc ... gtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGAC-
EST: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCATG TCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAEST: gi|26456742|gb|CA828325.1|CA828325
genomic: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAGgtaagtcccc ... gtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACA
EST: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAG TCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAEST: gi|32934477|gb|CF039289.1|CF039289
genomic: TCACCATGGGGTACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAGgtaagtcccc ... gtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACA
EST: ACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAG TCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACA
genomic: ACGCGCAGCTCGTCATCGGCCCCGCTGGGAGCGGCAAGgtaagtcccc ... gtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACA
aaggaggaggtagatgatagcttgctctaattggttacttgtggcgtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAATTCATATTGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTG
ctctaat putative branch site (score: 3)
tctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaacttttgaatacttgccgcactggggtctagggtctgattaaggaggaggtagatgatagcttgctctaattggttacttgtggcgtgcttgcagTCAACTTATTGCTCCAGTTTATACGACCATTGCCAGACCGTGGGAAGGACAATTCATATTGTCAATCTTGATCCAGCTGCTGAGCACTTCGACTATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT