Skip to another splice site:
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA

Basic information

species Zea mays
transcript GRMZM2G130987_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 3'ss of exon 2
-----------------------------gtaagtgttgtctt--tctaaaaatattgtgatcttcaattatcacaatt--ctaatcgtagc-----atttctctatcaa-gtctgcc-atagtagattataaaccttctgatctgtattta--atatatttgtattgt----gatgcac-attgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA
                              | | | ||  ||    ||  |||  | |||  | | | |||  |   |   ||  | |||||     || | ||    || | ||    ||   |   ||  |    ||||||   | ||||  || | |||  ||| |    | | | | | || | || ||||| ||||||||| ||||||||||| ||||||||| |||| || |||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||| 
gtaagtattatgagattaacactatgttctttactattacctgaaccttgaaacttagtg--ccttatttactatggtctgctgtttgtagcccaccatatttcagcgaatggctattgattaaatgctactacgtatctgattcatgtttaccatgtcttttgattatatttgttacgctaatgtacttttttacccagGAATGGCGCACAAAAGTTACTTGGTATCCTGATTGCAATTGGGGAAGCTGTGGCATATGTTTTGTCTGGAATGTATGGCAGTGTAAGCCAGCTTGGAACT

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G32680.1 (Glycine max), 3'ss of exon 2
gtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA
                                    ||   |||     ||    |  || || ||     | | | |   || || || |   | ||   || |||          ||| |||||  ||    ||  | | || |  ||||| ||||||||||| ||| | ||||| || ||||| ||| |||| || || || |||||||| || ||||||||||||||||||||  | |||||||||   
-----------------------------------catgtgcactggcttatgtctcacagttttc-----aattttcttaaggaggttttgcgcttttgtatatgt----------tttctattgacata---atgtcttctcctctctcagAAATGGTGCACAGAAGCTACTTGGCATTTTGATAGCTGTTGGTGAGGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTGGGTCAACTTGGAGTG

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G17950.1 (Glycine max), 3'ss of exon 2
gtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtat--ttaatatatttgtattgtgatgcacattgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA
                                                    |  |  |       | |||| | | | | || || || |   |  ||  || ||  |  ||    |||| | ||||  ||    ||| ||| || |    ||| ||||||||||| ||| | ||||| |||||||| ||| |||| ||||| || |||||||| || ||||||||||||||||||||  | |||||||||   
---------------------------------------------------gttatgtctcacggttgtcaattttccta-aggaggttttgctcagtcatatatgcttccttttcctattggcattgacata---atttcatctcctctaccagAAATGGTGCACAGAAGCTACTTGGCATCTTGATAGCTGTTGGTGAAGCAGTTGCATATGTTCTTTCTGGAATGTATGGTAGTGTTGGTCAACTTGGAGTG

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s2574g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA
                                           ||    |||  | || |  | || ||    | ||| |   ||  ||     |||| ||     | ||  ||||||   ||     ||     || |  | | |  ||||||||||||||||||||| | || || ||| |||| ||| |||| |||||||| |||||||| || || ||||||||||| ||||| ||||||||||||   
-------------------------------------------caggaataactgaagtagatttcaatttt-tttgctagtctaattt-----ccttatgtaacctgttctatatat--atacaacaatctgattttctctgcct--ctcagGAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGTTGCATATGTTCTCTCAGGAATGTATGGCAGTGTTAGCCAACTTGGAGTT

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv00s1338g00020.t01 (Vitis vinifera), 3'ss of exon 1
gtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA
                                           ||    |||  | || |  | || ||    | |||     ||  ||     |||| ||     | ||  ||||||   ||     ||     || |  | | |  ||||||||||||||||||||| | || || ||| |||| ||| |||| |||||||| |||||||| || || ||||||||||| ||||| ||||||||||||   
-------------------------------------------caggaataactgaagtagatttcaatttt-tttgcttgtctaattt-----ccttatgtagcctgttctatatat--atacaacaatctgattttctctgcct--ctcagGAATGGTGCACAAAAGCTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGTTGCATATGTTCTCTCAGGAATGTATGGCAGTGTTAGCCAACTTGGAGTT

upper sequence: GRMZM2G130987_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv19s0014g01020.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtgttgtctttctaaaaatattgtgatcttcaattatcacaattctaatcgtagcatttctctatcaagtctgccatagtagattataaaccttctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA
                                           ||    |||    || |  | || ||      |    ||| || | |    |||| ||     | ||  ||||||   ||   ||||     || |  ||| |  ||||||||||||||||||||  | || || ||| |||| ||| |||| |||||||| |||||||| || || ||||||||||| || || ||||||||||||   
-------------------------------------------caggaataactaaagtagatttcaat------ttttttaggagttcaatttccttatgtagcctgttctatatat--atacaatgatctgattttctcttcct--ctcagGAATGGTGCACAAAAACTACTGGGCATCCTGATAGCTGTTGGTGAAGCTGTTGCATATGTTCTCTCAGGAATGTATGGCAGCGTTAGCCAACTTGGAGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361484|gb|CD445841.1|CD445841
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|26456843|gb|CA828426.1|CA828426
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|32934318|gb|CF039130.1|CF039130
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|33091773|gb|CF051767.1|CF051767
EST:     AGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: AGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211074844|gb|FK968210.1|FK968210
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACA
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACA
EST: gi|211074839|gb|FK968205.1|FK968205
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|20300676|gb|BQ163619.1|BQ163619
EST:     GGATCGTGCTCTGCT                         GAATGG-GCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: GGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|22490947|gb|BU050870.1|BU050870
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|6021529|gb|AW066457.1|AW066457
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149111354|gb|EE294857.2|EE294857
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|44681773|gb|CK786821.1|CK786821
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|15198869|gb|BI423525.1|BI423525
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31350934|gb|CD435291.1|CD435291
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211074842|gb|FK968208.1|FK968208
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31359604|gb|CD443961.1|CD443961
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31351103|gb|CD435460.1|CD435460
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67035315|gb|CO463848.1|CO463848
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149008958|gb|EE041174.2|EE041174
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67037304|gb|CO464154.1|CO464154
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67029660|gb|CO458409.1|CO458409
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67035173|gb|CO463706.1|CO463706
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|67042883|gb|CO469138.1|CO469138
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149109194|gb|EE190067.2|EE190067
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148953634|gb|EC898991.2|EC898991
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148939934|gb|EC884655.2|EC884655
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31356382|gb|CD440739.1|CD440739
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|32914742|gb|CF019554.1|CF019554
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31360149|gb|CD444506.1|CD444506
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGAGCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148936308|gb|EC880390.2|EC880390
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|149113040|gb|EE295813.2|EE295813
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|47961762|gb|CN844471.1|CN844471
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|19436291|gb|BM952701.1|BM952701
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31353192|gb|CD437549.1|CD437549
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|116822305|gb|EC865696.1|EC865696
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31360614|gb|CD444971.1|CD444971
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|148932797|gb|EE285481.2|EE285481
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211072106|gb|FK968195.1|FK968195
EST:     CGAAGATCATTGAAGTTGACAACAGTGTGANGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: CGAAGATCATTGAAGTTGACAACAGTGTGA-GAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|31356381|gb|CD440738.1|CD440738
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
EST: gi|211072113|gb|FK968202.1|FK968202
EST:     TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCT                         GAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT
genomic: TCGAAGATCATTGAAGTTGACAACAGTGTGAGAGAGGATCGTGCTCTGCTgtaagtgttg ... ctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatctgtatttaatatatttgtattgtgatgcacattgcatttctttactcagGAATGGTGCACAAAAGTTGCTTGGTATCTTGATCGCTATTGGGGAAGCTGTGGCATATGTCCTGTCTGGAATGTATGGTAGTGTAAGCCAACTTGGAACA
                                          tttctttactc  CT-rich tract
        tatttaatatatttgt  TA-rich tract