Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatacaatcaaacttttctttgaagtgccatgctggcttagtaaccccttcattccagaatctgtttccgttgaaaaaactattcataattcaattgttctgatgtattttcaacagCTAAGAAAGGCTGGAGTTAATCTGGATGAAAATCCAGTAGTAAGCAATAAGAATTCCAGAAAAGATCTTGTAGTAGAAATTGATCCTGTCAATAATGAAA

Basic information

species Zea mays
transcript GRMZM2G130889_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130889_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 3'ss of exon 2
gtaaatacaatcaaacttttctttgaagtgccatgctggcttagtaaccccttcattccagaatctgtttccgttgaaaaaactattcataattcaattgttctgatgtattttcaacagCTAAGAAAGGCTGGAGTTAATCTGGATGAAAATCCAGTAGTAAGCAATAAGAATTCCAGAAAAGATCTTGTAGTAGAAATTGATCCTGTCAATAATGAAA------
            ||| |||  | |||| |||  |||||| ||| | | |  || || ||||          | || ||| || | ||                   ||| | ||  | || ||||||||||||||||| |||||||||||||||||  ||   |  | ||    |||||| || | |||||||   ||||||||||| | ||||||||||      
----------gtaaagtttgttctgaaatgcggtgctggtttacttaacttttaat-ccag----------ctttaaaataaatctt-------------------tgtttcttgtatagTTAAGAAAGGCTGGAGTTCATCTGGATGAAAATCCAACAG---GTGACAAAGTATCCAGAGAAAAGCTTGTAG---AAATTGATCCTATTAATAATGAAAGGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057740|gb|BM736407.1|BM736407
EST:     TCTGAGATTTCCCGATTAGAAGATGATATAAATCGGTTGCATGACCAG                         CTAAGAAAGGCTGGAGTTAATCTGGATGAAAATCCAGTAGTAAGCAACAAG
genomic: TCTGAGATTTCCCGATTAGAAGATGATATAAATCGGTTGCATGACCAGgtaaatacaa ... ttttcaacagCTAAGAAAGGCTGGAGTTAATCTGGATGAAAATCCAGTAGTAAGCAATAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttccgttgaaaaaactattcataattcaattgttctgatgtattttcaacagCTAAGAAAGGCTGGAGTTAATCTGGATGAAAATCCAGTAGTAAGCAATAAGAATTCCAGAAAAGATCTTGTAGTAGAAATTGATCCTGTCAATAATGAAA
                                   ttctgat  putative branch site (score: 3)
                                           tattttc  CT-rich tract
           aaaaaactattcataa  TA-rich tract