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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttgtcatactttttcgattgagcaaattgatgccattgttcttgtgcctttcactcaacatatttgagctgttcttttctgatgccttttgcagTATGGCTTATTAATAAGATCTGGCTTTTGGTTTAATGCTACATCATTGCGAGACTGGCCACTGCTAATGTGTTG

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 3'ss of exon 2
gttcttgtcatactttttcgattgagcaa--attgatgccattgttcttgtgccttt-cactcaacatattt------gagctgttcttttctgatg---ccttttgcagTATGGCTTATTAATAAGATCTGGCTTTTGGTTTAATGCTACATCATTGCGAGACTGGCCACTGCTAATGTGTTG
|||| |  |   || ||   ||  |   |  | || ||    | |||   ||| | |  ||   | |  |||      ||  |||| | |||  |||     |||||||||||||||||||||||||| |||| ||||||||||||| || ||||||||| ||||||||||| |||||||||||
gttcatagccgcctattcttatccactgataaatgctgttcattttcacttgcttatatacatgatacttttctttatgacttgttttcttcaaatgttcttttttgcagTATGGCTTATTAATAAGAGCTGGGTTTTGGTTTAATGATAAATCATTGCGGGACTGGCCACTTCTAATGTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149108049|gb|EE292403.2|EE292403
EST:     TTGTTCTGGTTGCGGTGAATAGCAGGCTCATTATTGAGAACCTGATGAAG                         TATGGCTTATTAATAAGATCTGGCTTTTGGTTTAATGCTACATCATTGCGA
genomic: TTGTTCTGGTTGCGGTGAATAGCAGGCTCATTATTGAGAACCTGATGAAGgttcttgtca ... ccttttgcagTATGGCTTATTAATAAGATCTGGCTTTTGGTTTAATGCTACATCATTGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtgcctttcactcaacatatttgagctgttcttttctgatgccttttgcagTATGGCTTATTAATAAGATCTGGCTTTTGGTTTAATGCTACATCATTGCGAGACTGGCCACTGCTAATGTGTTG
                                     ttctgat  putative branch site (score: 3)
                                           tgcctttt  CT-rich tract
                 aacatattt  TA-rich tract