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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcctcccacttcctatagtgttttgcttcacttattattcccttttctctgttctatgtaatcttacttggttattgttgatgtcatggtatttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG

Basic information

species Zea mays
transcript GRMZM2G130398_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 3'ss of exon 2
gtctgcctcccacttcctatagtgttttgcttcacttattattcccttttctctgttctatgtaatcttacttggttattgttgatgtcatggtatttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
||  |  |        |     | |||   | |  ||  ||   | | |||  |  | | || |||  |          |  ||| ||  |  ||||| | ||||||||| ||||||| ||||| ||||||||||| || ||||||
gttcggtttaactgctcccctttctttccttccttttgctaccgcttcttcctttctgtgtgcaattatg---------taatgacgttctaatatttgttaacagGACTGTTGTTGGAATCAAATGCAAAGATGGAATCGTCCTG

upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G14330.1 (Glycine max), 3'ss of exon 1
--------------------------------------------------------gtctgcctcccacttcctatagtgttttgcttcacttattatt--cccttttctctgttctatgtaatctt---acttggttattgttgatgtcatggtatttatga-------acagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
                                                            |  |   | ||   | |  |  ||  || | | |||||       ||| | | || ||  | || ||   | ||   ||||| |  ||   |   ||||   |        ||||||| || ||||||||||||||||||||||  ||||  ||
gttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcagGACTGTTATTGGGATCAAGTGCAAAGATGGGGTTGTGTTG

upper sequence: GRMZM2G130398_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G27020.1 (Arabidopsis thaliana), 3'ss of exon 1
-----------------------gtctgcctcccacttcctatagtgttttgcttcacttattattcccttttctctgttctatgtaatctta--cttggttattgttgatgtcatggtatttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
                        ||| |  ||        || |  ||| |||||    |   ||    |||   |  || |    |  |     ||| | |  ||   |  | |  | ||| |   ||||||| ||||||| ||||||||||||||||| |||||  ||
gttagttggctttatcttcttcgatcttcgccctttagtagatcggatttagcttctgaaaactttgagattttggttatcgacacgaattagggtttgttaaaagtctttccctttttttttcttcgcagGACTGTTGTTGGAATCAAGTGCAAAGATGGGATTGTTATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983025|gb|EE028929.2|EE028929
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|78081016|gb|DV509428.1|DV509428
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211351912|gb|FL214804.1|FL214804
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211421483|gb|FL073183.1|FL073183
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|71767052|gb|DR964989.1|DR964989
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211351916|gb|FL214808.1|FL214808
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|149106947|gb|EE188848.2|EE188848
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211354330|gb|FL214830.1|FL214830
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211421481|gb|FL073181.1|FL073181
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211349504|gb|FL214790.1|FL214790
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211354321|gb|FL214821.1|FL214821
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTKGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|148933477|gb|EC877180.2|EC877180
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|78089684|gb|DV518058.1|DV518058
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211349502|gb|FL214788.1|FL214788
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAACATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|19770141|gb|BQ034862.1|BQ034862
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|149044661|gb|EE047635.2|EE047635
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|76913938|gb|DV165334.1|DV165334
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|32843121|gb|CD982802.1|CD982802
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|28566562|gb|CB278210.1|CB278210
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211351922|gb|FL214814.1|FL214814
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|78106940|gb|DV525358.1|DV525358
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|37417861|gb|CF646590.1|CF646590
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|148949401|gb|EC894858.2|EC894858
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211349508|gb|FL214794.1|FL214794
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211303552|gb|FL073177.1|FL073177
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211354329|gb|FL214829.1|FL214829
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211354322|gb|FL214822.1|FL214822
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGGATCAAGTGCAAAGA
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGG-ATCAAGTGCAAAGA
EST: gi|29947590|gb|CB816734.1|CB816734
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|76289822|gb|DV029390.1|DV029390
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|149081024|gb|EE170124.2|EE170124
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|76280505|gb|DV020073.1|DV020073
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|148949400|gb|EC894857.2|EC894857
EST:     GTCGACAACAGCGG                         GACTATTGTTGGGATCAAGGGCAAAGATGGCATTGTCCTG
genomic: GTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211349515|gb|FL214801.1|FL214801
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211349514|gb|FL214800.1|FL214800
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211354317|gb|FL214817.1|FL214817
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211303549|gb|FL073174.1|FL073174
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|9254592|gb|BE345075.1|BE345075
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211354327|gb|FL214827.1|FL214827
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211303550|gb|FL073175.1|FL073175
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|71317411|gb|DR795418.1|DR795418
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211351924|gb|FL214816.1|FL214816
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|71449736|gb|DR830786.1|DR830786
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|148945160|gb|EC890360.2|EC890360
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211421482|gb|FL073182.1|FL073182
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211303551|gb|FL073176.1|FL073176
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|32862844|gb|CF002526.1|CF002526
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211349507|gb|FL214793.1|FL214793
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|149009039|gb|EE041221.2|EE041221
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|60351410|gb|DN218383.1|DN218383
EST:     GTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTGTTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
EST: gi|211351915|gb|FL214807.1|FL214807
EST:     GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGG                         GACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
genomic: GGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 447

GCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 457

GCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 499

GCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 307

GCAGCATAGGCACAGGTTATGATTTGTCTGTCACGACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAGTATGCCACCAAGGCCGTCGACAACAGCGGgtctgcctcc ... ttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttctatgtaatcttacttggttattgttgatgtcatggtatttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG
                                          tatttatgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgcctcccacttcctatagtgttttgcttcacttattattcccttttctctgttctatgtaatcttacttggttattgttgatgtcatggtatttatgaacagGACTATTGTTGGGATCAAGTGCAAAGATGGCATTGTCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG