1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaaccctagaccctagttatgtacttagcattgcagcactctggcatcggtctaaattttgtttcaaatataaaatgccttattctattctgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTTTGAATAAGGATATAATATCACACTTTGTGCTCCGTCTTGTCTACTGCA
species | Zea mays |
transcript | GRMZM2G130351_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|78118655|gb|DV537039.1|DV537039
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|149081470|gb|EE170604.2|EE170604
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|91878919|gb|EB408876.1|EB408876
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|89248072|gb|DY619858.1|DY619858
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|76289958|gb|DV029526.1|DV029526
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|110533099|gb|EE037279.1|EE037279
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|148953215|gb|EE152697.2|EE152697
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTEST: gi|76021633|gb|DT948803.1|DT948803
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
EST: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTG GTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
genomic: TTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGGAGAAACTGgtgagcgatt ... tgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACT
atcggtctaaattttgtttcaaatataaaatgccttattctattctgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTTTGAATAAGGATATAATATCACACTTTGTGCTCCGTCTTGTCTACTGCA
gtctaaa putative branch site (score: 11)
ccttattctattct putative PPT
tctaaattttgtttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaccctagaccctagttatgtacttagcattgcagcactctggcatcggtctaaattttgtttcaaatataaaatgccttattctattctgcacttcagGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTTTGAATAAGGATATAATATCACACTTTGTGCTCCGTCTTGTCTACTGCA
- - - - - - - - - - - - - - - ttgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctta