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...atatgtgcagttccatttgtaatctgtgcggttctgtgatatacactgtaattatcaagctagtgaatgtattgactgaagttaatattcattgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG
species | Zea mays |
transcript | GRMZM2G130230_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|74237092|gb|DT645006.1|DT645006
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|71449499|gb|DR830549.1|DR830549
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398371|gb|FK956119.1|FK956119
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|50339442|gb|CO534568.1|CO534568
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGTATAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|71447340|gb|DR828390.1|DR828390
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|89759526|gb|DY688327.1|DY688327
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003554|gb|FK956133.1|FK956133
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|78083439|gb|DV511832.1|DV511832
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398372|gb|FK956120.1|FK956120
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398375|gb|FK956123.1|FK956123
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398373|gb|FK956121.1|FK956121
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003558|gb|FK956137.1|FK956137
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003549|gb|FK956128.1|FK956128
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398378|gb|FK956126.1|FK956126
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003552|gb|FK956131.1|FK956131
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: CCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAEST: gi|211003559|gb|FK956138.1|FK956138
genomic: CCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGA-GCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAA
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|71436592|gb|DR817642.1|DR817642
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003548|gb|FK956127.1|FK956127
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003556|gb|FK956135.1|FK956135
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGNNNNNNNCATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003560|gb|FK956139.1|FK956139
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398377|gb|FK956125.1|FK956125
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398376|gb|FK956124.1|FK956124
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003553|gb|FK956132.1|FK956132
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|93283386|gb|EB675650.1|EB675650
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|78109778|gb|DV528194.1|DV528194
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|71449885|gb|DR830935.1|DR830935
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211398374|gb|FK956122.1|FK956122
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGNNNNNNNCATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATEST: gi|211003555|gb|FK956134.1|FK956134
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
EST: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAG GGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCCCTCTACCACCTCTTTGAGCAGgtatgaacta ... attgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAAT
ctgtaattatcaagctagtgaatgtattgactgaagttaatattcattgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG
ttaatattcattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtgcagttccatttgtaatctgtgcggttctgtgatatacactgtaattatcaagctagtgaatgtattgactgaagttaatattcattgttacagGGATTCATACAATCTGGAGAAGTCCATATATTTGGTTATGCTAGATCAAATCTTTCTGATGATGGGTTAAGAGAACGCATTCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -tgtgcag
- - - - - - ccatttg
- - - - - - - - - - - - - - -ggttctg
- - - - - - - - - - - - - - - - - - - - -tacactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatg