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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcactgcttgtattgtcttctcctagcgtcactagctagtcctcaagaagaggtttctggtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG

Basic information

species Zea mays
transcript GRMZM2G129954_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g04720.1 (Oryza sativa), 3'ss of exon 2
gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcactgcttgtattgtcttctcctagcgtcactagctagtcctcaagaagaggtttctggtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG
||||||||| ||  | | ||      ||| | |||    | |       |  ||  ||       | ||| | |||  | |                 || || || ||||| ||||||   |  ||    | |    |   | ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
gtaagaagatgaatggtacca-----taggtgctaaccat-gaaaaaaaatacggattaacagGAGGTTGCAGTGTTCTTT-----------------GTTCTGAACAAGAG-TTTCTGAATTGCTC----TTTTATGGATTAACAGGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCAAG

upper sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g04500.1 (Oryza sativa), 3'ss of exon 2
gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcactgcttgtattgtcttctcctagcgtcactagctagtcctcaagaagaggtttctggtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG
                                             |    |   ||    | ||     ||  |  |       |       |   | || || || ||||| |||||    |  ||    | |    |  || ||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
---------------------------------------------gtaagaagatgaatggtaccataggtgctaaccatgaaaaaaaattgtgttttgttctgaacaagag-tttctaaattgctc----ttttatggataaacagGAGGTTGGAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGATCTTCTCAAGAAGATCAAG

upper sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA03G28570.1 (Glycine max), 3'ss of exon 2
------------------------gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcactgcttgtattgtcttctcctagcgtcactagctagtcctcaagaagaggtttctgg---tgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG
                         |    | ||| ||  ||  | ||  |      ||  | ||  ||   ||||  |||||||   ||  |  | ||| |  |  | ||  |||     |||           || |||||    |||  |  |  | | |   |     |||| ||||  ||||| ||  | || ||||| ||||| ||||||||||||||||| |||||| |||| ||||| ||||||
gtatagtgtgtttttttggttagaatgcataaaaggtg-ttttttttttttgtaatttaaaaatt--ttaaccaact-tgttgtg--ttgtgttcagtgtttatttttggc--cacagatcagtttctttttctgggattctgagattgtttttggctttttgtgtctttatagGAGGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAG

upper sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G31320.2 (Glycine max), 3'ss of exon 2
-------------------gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcactgcttgtattgtcttctcctagcgtcactagctagtcctcaagaagaggtttctgg---tgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG
                   || ||| | | |  | |     ||  ||| |   |    ||            ||||||||   ||  |  | ||| |  |  | ||  |||     |||           || |||||    |||  |  |  | | |   |     |||| ||||  ||||| ||  | || ||||| ||||| ||||||||||||||||| |||||| |||| ||||| ||||||
gtatggtgtgtttttttttgttagatgcataaaggt----gtttttagttttaaaattttaaccaacttgttgtgttgtgt-ttgtgttcagtgtttatttttggc--cacagatcagtttctttttctgggattctgagattgtttttggatttttgtgtctttatagGAGGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAG

upper sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ14702 (Selaginella moellendorffii), 3'ss of exon 2
----------------------------------------gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcact---gcttgtattgtcttctcctagc-------gtcactagctagtcctcaagaagaggtttctggtgtaatcagGATGTGGCTGCCAAT-CAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG
                                        || | |      | ||||  |||   | |     |  |   |||  |  | |  ||||| |   |   | | || |||     | |||||        ||  | |||  |   |  || ||  ||  | |  |  || || | | |||     | ||||   |     | ||| |||||||||| ||||| || ||||| |  |||||||| ||||| |||||||||||| |||||
gttcgtgctcttcttctttcttgtgctggattgaaaactcgttaaatcgttgtcgcttgatctgtatggaatgaaaaaaaaggt--gatagctttgttgggtggttgtggtggtgttggtggatgctagctaagctaatctttggctgatttcctcga-gattttctttgcttcctctggcttttgcttttgttgcagGCCATTAAAATAAACTTGATCATCACGGACTATTGTATGCCGGAAATGACAGGCTATGATCTGCTCAAGAAGGTCAAG

upper sequence: GRMZM2G129954_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ14701 (Selaginella moellendorffii), 3'ss of exon 2
gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcactgcttg-tattgtcttctcctagcgtcactagctagtcctcaagaagaggtttctggtgtaatcagGATGTGGCTGCCAAT-CAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG
                                            |||      ||| || |   || | | |  |  ||   |  |   ||  | |||  |   |  || ||  ||  | |  |  || || | | |||     | ||||   |     | ||| |||||||||| ||||| || ||||| |  |||||||| ||||| |||||||||||| |||||
--------------------------------------------tgggtggttgtggtg-gtgttggtggatgctagctaagctaa---tctttggctgatttcctcga-gattttctttgcttcctctggcttttgcttttgttgcagGCCATTAAAATAAACTTGATCATCACGGACTATTGTATGCCGGAAATGACAGGCTATGATCTGCTCAAGAAGGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211012455|gb|FL207173.1|FL207173
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009674|gb|FL207158.1|FL207158
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009673|gb|FL207157.1|FL207157
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211012446|gb|FL207164.1|FL207164
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009675|gb|FL207159.1|FL207159
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|91878635|gb|EB408592.1|EB408592
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|40303893|gb|CK348280.1|CK348280
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009671|gb|FL207155.1|FL207155
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|19822364|gb|BQ048388.1|BQ048388
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211012448|gb|FL207166.1|FL207166
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009672|gb|FL207156.1|FL207156
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009678|gb|FL207162.1|FL207162
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|37382649|gb|CF628283.1|CF628283
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009679|gb|FL207163.1|FL207163
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACT
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACT
EST: gi|76933673|gb|DV173540.1|DV173540
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009677|gb|FL207161.1|FL207161
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|26455829|gb|CA827412.1|CA827412
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009676|gb|FL207160.1|FL207160
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|40335323|gb|CK369393.1|CK369393
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|91869452|gb|EB400392.1|EB400392
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|113704219|gb|EE681723.1|EE681723
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211012454|gb|FL207172.1|FL207172
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|74237752|gb|DT645666.1|DT645666
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211012453|gb|FL207171.1|FL207171
EST:     GGCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGGCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211012452|gb|FL207170.1|FL207170
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211009670|gb|FL207154.1|FL207154
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211012447|gb|FL207165.1|FL207165
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC
EST: gi|211012449|gb|FL207167.1|FL207167
EST:     GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTG                         GATGTKGCTGCCAATCAGGATGTGGCTGTKAACCTGATCATCACAGACTAC
genomic: GCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 31

TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 154

TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 153

TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 32

TGACCACTGTCGACTCCGGGAGCAAGGCGCTGCAGTTCCTGGGCCTCCATGACCAGGACAGCACGGTTCCTCCTGTCCACACGCACCAGCTGgtaagaagaa ... gtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaagaagatggcttcctcttcctagctcctacgagttggttggtcaaccgtgttgtgcactgcttgtattgtcttctcctagcgtcactagctagtcctcaagaagaggtttctggtgtaatcagGATGTGGCTGCCAATCAGGATGTGGCTGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAGGATATGACCTGCTCAAGAAGATCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA