Sequence
atgc intronic sequence ATGC exonic sequence...gctattaatatcatgtgggtatgatataattttccttccccttgttttcatctttgctaaacaggaagctaacactgctgtctcgacttgcttgatatagGTGTATAATGAGGCATTATCTCTCCTTGAGCTCTGTACATGCAAATTGAGGGTTGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G129554_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g51900.1 (Oryza sativa), 3'ss of exon 2
gctattaatatcatgtgggtatgatataattttccttccccttgttttcatctttgctaaacaggaagctaacactgctgtct---cgacttgcttgatatagGTGTATAATGAGGCATTATCTCTCCTTGAGCTCTGTACATGCAAATTGAGGGTTGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATT
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---accctcatactagtcctttggtttattttttaatgtactgcattatatggtcataatccataacatctatgtgattgtttatttgaattgcttgtggtagGTTCATAATGAGGCATCATCTCTCCTTGAATTCTGTACATCCAAATTGAAGGTTGTGCAAGTGAATGCGAGCATGTCAGACAAAGATATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28909563|gb|CB330990.1|CB330990EST: CTGCACCAAATGCTTTCATCCTGGTTCCTACTCGAGATTTATGCCACCAG GTGTATAATGAGGCATTATCTCTCCTTGAGCTCTGTACATGCAAATTGAGG
genomic: CTGCACCAAATGCTTTCATCCTGGTTCCTACTCGAGATTTATGCCACCAGgtagtgaacc ... cttgatatagGTGTATAATGAGGCATTATCTCTCCTTGAGCTCTGTACATGCAAATTGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcatctttgctaaacaggaagctaacactgctgtctcgacttgcttgatatagGTGTATAATGAGGCATTATCTCTCCTTGAGCTCTGTACATGCAAATTGAGGGTTGTGCAAGTTACCGCGAGCATGTCGGATAAGGATATT
cttgctt CT-rich tract
ttgatata TA-rich tract