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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgccctgcataatctacgtcctgtccactataacatttcagttcagaaatattatcttatcatgatgatttattattttcatagGTTCTCGAACAATTGGTGTTATCACAAAG

Basic information

species Zea mays
transcript GRMZM2G129155_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129155_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 3'ss of exon 2
gtatgtgtgccctgcataatctacgtcctgtccactataacatttcagttcagaaatatta--tcttatcatga--tgatttattattttcatagGTTCTCGAACAATTGGTGTTATCACAAAG
            |    | |  |    |  |||| || |  |||   ||| | | || ||   |||||| |  |  ||||| ||| || |  ||||||||||||||||||||||||| ||||||
-----------gtattcactacagactcaatccattagataattcatgttaatatattttgtttcttattaataattgattcattgttcttgtagGTTCTCGAACAATTGGTGTTATAACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075510|gb|EE164038.2|EE164038
EST:     TTTAGCAAACTCTGATGCTCTTCAAATGGCTCGGGTTGCTGATCCTGATG                         GTTCTCGAACAATTGGTGTTATCACAAAG
genomic: TTTAGCAAACTCTGATGCTCTTCAAATGGCTCGGGTTGCTGATCCTGATGgtatgtgtgc ... attttcatagGTTCTCGAACAATTGGTGTTATCACAAAG
EST: gi|91874420|gb|EB404377.1|EB404377
EST:     TTTAGCAAACTCTGATGCTCTTCAAATGGCTCGGGTTGCTGATCCTGATG                         GTTCTCCGAACA-TTGGTGTTATCACAAAGTTGG
genomic: TTTAGCAAACTCTGATGCTCTTCAAATGGCTCGGGTTGCTGATCCTGATGgtatgtgtgc ... attttcatagGTTCTC-GAACAATTGGTGTTATCACAAAGTTGG
EST: gi|91874421|gb|EB404378.1|EB404378
EST:     TTTAGCAAACTCTGATGCTCTTCAAATGGCTCGGGTTGCTGATCCTGATG                         GTTCTCGAACAATTGGTGTTATCACAAAG
genomic: TTTAGCAAACTCTGATGCTCTTCAAATGGCTCGGGTTGCTGATCCTGATGgtatgtgtgc ... attttcatagGTTCTCGAACAATTGGTGTTATCACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacatttcagttcagaaatattatcttatcatgatgatttattattttcatagGTTCTCGAACAATTGGTGTTATCACAAAG
 ctataac  putative branch site (score: 3)
                                           ttattttc  putative PPT
                 aaatattatcttatca  TA-rich tract