Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG

Basic information

species Zea mays
transcript GRMZM2G129015_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G38950.1 (Glycine max), 3'ss of exon 2
gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgt----atgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
       | | |||| |      ||    |||||    |   |   |  || ||  | |||||  ||   |    || |  |    |  ||    || |  ||||| ||||| |||||| |||| ||||| |||||||||||||| |||||||| || || || |||||||| || |||||  ||||  
-------gttgtttttattattatt----tatttcactttcttccaccttcaaattttttgtgcgaagcatttcaattaattgaaaaaaataaaataataacagGACAAGGCCATCAAGAGGTTTTTGGTTAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G40660.1 (Glycine max), 3'ss of exon 2
gttcttggat-attttgacctgcgttgcaatatttgggctcaattatct-----gtcgaaactg--ttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
||| ||   | | |||  | |        |  |||    |   || | |     ||   || ||   | |  |   | | |||       | |||| || |    ||||| ||||| |||||| ||||  ||||||||||||||||||| |||||||| || || || |||||||| || |||||  ||||  
gtttttatttcactttctcttaaaccttcaattttttttttttttgttttaggcgtttcaattgacctttttacgctttgtgaataaaaaaatattattaaaaaacagGACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G16600.1 (Glycine max), 3'ss of exon 1
----gttcttggat-attttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
    ||||||   | | |||      ||||  | | |||     |    ||      ||| | || ||  |  ||||  |       |  ||     | |  ||||| |||||||  ||| |||| |||||||||||||||||||| ||||||   || || ||                          
gttcgttcttatttcactttcttaaacgttcaattttttttctacggcaattcaattaaagttttttgtgatttgtaaaaaaaaataataat-----aataacagGACAAGGCTAGGAAGAGGTTTTTGGTGAGGAACATTGTTGAACAGGCTTTAGTCAGAGAT-------------------------

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G39940.1 (Glycine max), 3'ss of exon 2
gttcttggat-attttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
||||||   | | |||   |  | || |  | |||    | | || | ||  | || |    |  || || | |||  || |    |    ||| |  ||||| |||||||||||| ||||  ||||||||||||||||||| |||||||| || || || ||||||||||| |||||  | ||  
gttcttatttcactttcttcaaccttccttttttt---tttatttttatgcggcaatt-caattaaagattt-tgagatttgtgaaaaaaattaataacagGACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAGGCTTGTGTCTACGAAC

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatga--cgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
       | |||| |    | || |    |  ||   |      || |||   |    ||    |   |  || |  | || |  ||            ||||| ||||| |||||| ||||  | ||||||||||||||||| |||||||| || || || |||||||| ||||||||  ||||  
-------gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA17G18200.1 (Glycine max), 3'ss of exon 2
gttcttggatattttg--acctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggca-cta---ttttttactcgc----------agGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
||| ||   ||||||   |    | ||       ||    ||    | || ||  |  ||| | |    || |      |   || |||   |||| | |||||          |||| ||||| |||||| ||||  | ||||||||||||||||| |||||||| || || || |||||||| ||||||||  ||||  
gtttttttttattttattattatcattatttcgctttctttcttccacct-tcagatttgt-gcgaggcatttcaattttcaacaactaaccttttgtgctcgctctgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 2
gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggca------ctattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
|||| |   |||||     |    |  ||  ||     |   || ||||  | || |    |      | | ||   || | |        |  |  || |  ||||| |||||||||||| ||||  ||||||||||||||||||| |||||||| || || || || |||||||| |||||  ||||  
gttcgttcttatttcacttt---cttaaacgttcaaatttttttttctgcggcaattcaattaatttttttttgcgatttgtaaaaaaataaaataataataacagGACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTTCAGGAGGCTTGTGTCTATGAAC

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G06000.1 (Glycine max), 3'ss of exon 1
gttcttggat---attttgacctgcgttgcaatatttgggctcaat-tatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
||| ||  ||   | |||    | | ||  ||  |||| ||      | || ||  ||  | ||| |     || ||    ||    ||     ||| |  ||||| |||||||| ||| ||||  ||||||||||||||||||| |||||||| || || || |||  ||| ||||||          
gtttttttattttactttcttatacctttaaagttttgtgcaaggcatttcagttaaagtttttgcgctttgtggatttttttt-ttcttcaaattaataacagGACAAGGCTATTAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGTTGGAAGCCTGT----------

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 2
----gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
      ||||  |  || |   ||   |      || |    | | |  | |||  |   || | ||   |   | ||  | |   |  ||  |||      |||| ||||| || ||| ||||| | |||||||||||||| |||||||||||| | || || || ||||| ||  | ||  |||| |
gtactctctttcaccttctcttctcaatcaatcaatctccagtaattcttatgtgtattttgatttg---atcttgtggtggttctataataatttggg-atagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT2G40590.1 (Arabidopsis thaliana), 3'ss of exon 2
gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
|| ||    |  |    |     |   |  | |    ||| | || ||  | |    | | | ||  |  | |   | ||| | |||   ||      |||| ||||| || ||| ||||| | |||||||||||||| |||||||||||| | || || || ||||| ||  | ||  |||| |
gtactctcttcctccttctcttctccaatcaatcaatctccagtaact-cctatgtggattttgattagatcttgtggtggtaatataaatt-tggatagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 3'ss of exon 3
gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
      |  |   |  |  ||  ||   || || | | |    ||||    | | | || || |||   ||  |   |||| | | | |  |     ||||| ||||| |||||| |||| |||||||||||||| || ||||| ||||| |||||||| || ||||||||||| ||  ||||  
------gtctcgctccatttgtattctgat-ttagtggttttgtatc-aaagcatcagtagttgaattggtgcgtgtttggaattgtgtgat-----cagGACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACA

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: PP1S375_10V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------------------------gttcttgga-----tattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatga--cgttg--gcactattttttactcg-------cagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
                                                      || ||||      ||||||      |       | | || | |   |        ||   ||| |||  |     | ||   | |   |||  ||| |  |           ||||| |||||  | |||||||| |||||  | |||||||| ||||||||||||||  | || ||||| |||||||||||  | || |
gtaactttttctagttgtattgggtgccgatctttaatcggccttgtagttgtttttttgggatccctattttttataactcgatggtttatgagattcgtggatgtcagaggttgtcgtgttagggtcaagaattgctaacgcatcattctgaaaaaaaataattcagGACAAGGCAGTGAAGCGGTTTTTGGTTCGCAACATTGTCGAGCAGGCTGCTGTTCGTGATGTGCAAGAGGCCTGTGTATACGACG

upper sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
lower sequence: PP1S169_19V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------gttcttggatattttga----cctgcgttgcaatat----ttgggctcaattatctgtcgaaactgttgtgg-aaaatgtatga-cgttgg-cactatttttta--ctcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
                                                     ||    |||   || |    |  | || | ||  |    |    ||||| ||| || |     | |      |  || ||  | || ||  || |  | || |   | |||||| |||||  | |||||||| |||||| | |||||||||||||||||||||||  | || ||||| || || || ||  | ||||
gttgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaattggctgatcagttaagaatcaggtgtcgtaaactactgtcaaactcaagtatgtgccatttttatcacattaggatttagaatcgctgatcattggtgttgaattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211028008|gb|FL427829.1|FL427829
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211225818|gb|FL402226.1|FL402226
EST:     GCCACRTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCWGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211414076|gb|FL428568.1|FL428568
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211481696|gb|FL379732.1|FL379732
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|14548462|gb|BI096806.1|BI096806
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGT-CTTGGT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGT
EST: gi|211251914|gb|FL397017.1|FL397017
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211105084|gb|FL400881.1|FL400881
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211003074|gb|FL395294.1|FL395294
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211428718|gb|FL387537.1|FL387537
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211494447|gb|FL428213.1|FL428213
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211008308|gb|FL375737.1|FL375737
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211300772|gb|FL380990.1|FL380990
EST:     GCCACGTCAAGTACATACGCTGCTCCMACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211029434|gb|FL377504.1|FL377504
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211098301|gb|FL430057.1|FL430057
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211182197|gb|FL384676.1|FL384676
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAS                         Y
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcag-
EST: gi|211182197|gb|FL384676.1|FL384676
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAS                         Y
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcag-
EST: gi|211479386|gb|FL401946.1|FL401946
EST:     GCCACGTCAAGTACATACGCTGCTCCMACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTG
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTG
EST: gi|211171486|gb|FL413937.1|FL413937
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211060962|gb|FL426594.1|FL426594
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211079024|gb|FL378008.1|FL378008
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211308800|gb|FL369632.1|FL369632
EST:     GCCRCGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACAT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACAT
EST: gi|211360562|gb|FL385746.1|FL385746
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211048101|gb|FL385531.1|FL385531
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211392940|gb|FL404132.1|FL404132
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211511688|gb|FL409484.1|FL409484
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGA
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGA
EST: gi|211474296|gb|FL410817.1|FL410817
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211509323|gb|FL409474.1|FL409474
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|60352753|gb|DN219726.1|DN219726
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|15053886|gb|BI359431.1|BI359431
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCA
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCA
EST: gi|211466709|gb|FL410769.1|FL410769
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCSCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
EST: gi|211334464|gb|FL399680.1|FL399680
EST:     GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAG                         GATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT
genomic: GCCACGTCAAGTACATACGCTGCTCCAACTGCGCCAAGTGCTGTCCAAAGgtagccgttt ... ttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG
                                         ttttttactc  CT-rich tract
                                     actatttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatgacgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
gttcttg
- - - - - - - tgacctg
- - - - - - - - - - -cgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtatg