Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccccgcacgatctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACG

Basic information

species Zea mays
transcript GRMZM2G128995_T06
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 2
gttccccgcacgatctcgatcccctctcccctctccagctgccccggggcactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACG
          | |||||  || | |||||||  ||  | |  |||  | | |    |||| |  |  | || |  | |   || | ||          | ||||||||| |||||| | ||||| || || |||||||||||||||||||||||||| || ||||||||||| || |||||||  ||| | |||||||| ||||
-----gtaacccatctct-tctcttctccccgatctcgatctcccttgccccccagctctcacgcgattcc-tattattcctgccgctg---------ctgcagTCCAACGTCTTCATCGAGGGGGTCTCGCACAAGATCCGGAGGCAGATCGAGGAGCTAGAGCGCGCCGGGGGTGTCGAGAGTGGGGCTCTCACCGTTGACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211136925|gb|FL422189.1|FL422189
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211377201|gb|FL412470.1|FL412470
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCG
EST: gi|211539519|gb|FL409049.1|FL409049
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGYCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211363177|gb|FL385284.1|FL385284
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211441636|gb|FL403705.1|FL403705
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211202638|gb|FL424402.1|FL424402
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211247493|gb|FL399189.1|FL399189
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAA
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAA
EST: gi|211504705|gb|FL413781.1|FL413781
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGANCTCGTCWAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCMGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|149102700|gb|EE288050.2|EE288050
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|15312764|gb|BI478361.1|BI478361
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211264685|gb|FL426671.1|FL426671
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG
EST: gi|211217327|gb|FL397497.1|FL397497
EST:     GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAG                         TCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAG-CAGATCGAG
genomic: GCGTCGGCACCCTCGACTCGCTCCTCGCGCTCAGTGACGACCTCGTCAAGgttccccgca ... atacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactagcctctgattccgtgccatcgtgtgtttgtctctatatgtatacccgcagTCCAATGTCTTCGTGGAGGGCGTGTCACACAAGATCCGGAGGCAGATCGAGGACCTCGAGCGCGCCGGAGGGGTCGAGACCGGGACCCTCACCGTCGACG
       ctctgat  putative branch site (score: 4)
                                      tatatgtata  TA-rich tract