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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataatcaaactattatgtgaaatgccatgctggcttagtaacctctttattccagaatctgttcccttgaaaaaactattcataattcttttttttctgatgccttttcaacagCTAAGAAGGGCTGGAGTTCATCTGGATGAAAATCCAGTAATAAGCAACAAGAATTCCAGAAAAAATCCTGTAGAAATTGATCATGTCAATAATGAAAGGC

Basic information

species Zea mays
transcript GRMZM2G128914_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128914_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 3'ss of exon 2
gtaaataatcaaactattatgtgaaatgccatgctggcttagtaacctctttattccagaatctgttcccttgaaaaaactattcataattcttttttttctgatgccttttcaacagCTAAGAAGGGCTGGAGTTCATCTGGATGAAAATCCAGTAATAAGCAACAAGAATTCCAGAAAAAATCCTGTAGAAATTGATCATGTCAATAATGAAAGGC---
          ||| | |  | ||||||||  |||||| ||| | | || |||| |||||         | || |||          ||| ||||| |||  ||           | || |||||| ||||||||||||||||||||||||||||   | | |  ||||    |||||| |||| | |||||||||||||| | | ||||||||||||    
--------gtaaagtttgttctgaaatgcggtgctggtttacttaact-tttaatccag---------ctttaaaa----------taaatctttgtttcttgt----------atagTTAAGAAAGGCTGGAGTTCATCTGGATGAAAATCCA---ACAGGTGACAAAGTATCCAGAGAAAAGCTTGTAGAAATTGATCCTATTAATAATGAAAGGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcccttgaaaaaactattcataattcttttttttctgatgccttttcaacagCTAAGAAGGGCTGGAGTTCATCTGGATGAAAATCCAGTAATAAGCAACAAGAATTCCAGAAAAAATCCTGTAGAAATTGATCATGTCAATAATGAAAGGC
                                   ttctgat  putative branch site (score: 3)
                          ttcttttttttctgat  CT-rich tract
       ttgaaaaaactattca  TA-rich tract