Sequence
atgc intronic sequence ATGC exonic sequencegttagatgcttactatttttttgtttgtatattttatcctagataaacatcttttatgactatggtactccttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g11660.1 (Oryza sativa), 3'ss of exon 4
-gttagatgcttactatttt--tttgtttgtatattttatcct---agataaacatcttttatgactatggtact-ccttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
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gtttgcatgcttcttatgttatttcttctgtatatttctttctcacatgtagaccttttttatgcctatgctataatcaaatatagGAAAAGAACACAAACATCAAATGCTTCTTAATGGACCCACCTGGATCTGGTCTGTTCAATAAGGTTACTAGAGGGGTGATGTACACAAAAGAGGAAGCTG
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 8
gttagatgcttactatttttttgtttgtatattttatcctagataaacatcttttatgactatggtactccttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
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-----------------------------------gtctgagttg----tttcttgtt-ctatg----ttctca-acagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G01780.2 (Glycine max), 3'ss of exon 4
----gttagatgcttactatttttttgtt-tgtatatttt-atcctagataaacatcttttatga-----ctatggtactcc-ttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
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gtttaccacatccccccttcctccaggttgtagatgttctcattttgagtgtgaaagttatctgagttatttctggttctatgttcaacagGAAAAGAATCCAAACATCAAGTGCTTCCTCTTAGATCCTCCTGGCTCTGGTTTGTTTAATAAGGTAACCAGGGGAGTGATGTACACCAAAGAGGAGGCGG
upper sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G55880.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------------------gttagatgcttactatttttttgtttgtatattttatcc-tagataaacatcttttatgactatggtactccttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
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gtataattactcagggcttatactaatcaaagatgtaagaatgagtaattcgtggatgttataagcaaaagaaaaactcataacttgttggtgcat-ttatacagGATAAGAATGAAAGAGTTAAATGTTTTCTGATTGATCCTCCTGGATCTGGTCTGTACAATAAAGTAACACGGGGAGTGATGTACACAAGAGAAGAAGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtatattttatcctagataaacatcttttatgactatggtactccttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
tactcctt CT-rich tract
ataaacatcttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagatgcttactatttttttgtttgtatattttatcctagataaacatcttttatgactatggtactccttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG