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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttccttcttttacaatccgaaatcattatcacatagtatgttcgctattattgtgtaaattatcaatgtttgtaatattttctctctgtttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG

Basic information

species Zea mays
transcript GRMZM2G128080_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128080_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g16100.1 (Oryza sativa), 3'ss of exon 2
ctttccttcttttacaatccgaaatca-ttatcaca-tagtatgttcgctattattgtgtaaattatcaatgtttgtaatattttctc-tctgtttac----tgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG
   | |  ||| ||||  | |||| || ||||   | ||| | | |   |||  || | ||| ||| |||| ||| || |||| |||| || |||| |    |||||||||| || || ||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||| |||||
---ttccccttgtacatgctgaaagcagttatggtagtagcaggctg--tatctttct-taagttagcaatattttta-tattatctcatcagttttccatatgtagAATGATAAAAGGGAAAGGCTTGTGAAAGCAAGTCGGGATTTGACAATGAACAGCAAAAAGGCCATCTTTCAGGTTCACAG

upper sequence: GRMZM2G128080_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT2G03780.1 (Arabidopsis thaliana), 3'ss of exon 2
ctttccttctt-ttacaatccgaaatcattatcacatagtatgttcgctattattgtgtaaattatcaatgtttgtaatattttc-tctctgtttact-gtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG
   || ||| | || |||   |   |   ||  | ||  |||    || | |   |  ||||  |  |   ||| |    |||   |   |||||  | ||||||||| ||| |||||||  | ||||| |  ||||| ||||| ||||||||||||||||| || ||||||||||| |||||
tgatctttcatgttgcaacttgggttttgtaatagattctata---gcgaattgagaataaaggaggaggctttatctggtttctatgattgtttctttgtagAATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626347|gb|AW257879.1|AW257879
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|149042519|gb|EE047203.2|EE047203
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|76286839|gb|DV026407.1|DV026407
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|101382451|gb|EB813281.1|EB813281
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|148938451|gb|EC882769.2|EC882769
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|211362118|gb|FL332260.1|FL332260
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|211158653|gb|FK974899.1|FK974899
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|211185838|gb|FL326885.1|FL326885
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACCATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|211134103|gb|FL315808.1|FL315808
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|211314481|gb|FL348235.1|FL348235
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|211477295|gb|FL319648.1|FL319648
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|211439800|gb|FL306622.1|FL306622
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|71328613|gb|DR800971.1|DR800971
EST:     GGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: GGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
EST: gi|15499422|gb|BI595935.1|BI595935
EST:     CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTG                         AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC
genomic: CCGCGATGAAGGCGGAGTTCGCCAAGCACGCCGAGTACCTCAACACCCTGgtactttcgc ... tttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctattattgtgtaaattatcaatgtttgtaatattttctctctgtttactgtagAATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG
                                  ttttctctctgtttac  CT-rich tract
          tgtaaattatcaatgt  TA-rich tract