1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatgttctttaccatggcttcataaccgaatagtccaagtgttttactggtttctttgatgtagagttcattgtcttcatataccgattatttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAATACATTGCAAAACTAGTAAAAGAATTACAA
species | Zea mays |
transcript | GRMZM2G128080_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTEST: gi|211185838|gb|FL326885.1|FL326885
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
EST: AGTCGGGATATTACCATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTEST: gi|76286839|gb|DV026407.1|DV026407
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTEST: gi|211439800|gb|FL306622.1|FL306622
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTEST: gi|211158652|gb|FK974898.1|FK974898
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCCGAAAATGATCTEST: gi|211158653|gb|FK974899.1|FK974899
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTEST: gi|71328613|gb|DR800971.1|DR800971
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTEST: gi|101382451|gb|EB813281.1|EB813281
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
EST: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAG AATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
genomic: AGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtg ... tttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCT
actggtttctttgatgtagagttcattgtcttcatataccgattatttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAATACATTGCAAAACTAGTAAAAGAATTACAA
ctttgat putative branch site (score: 82)
tttgtttc putative PPT
attatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgttctttaccatggcttcataaccgaatagtccaagtgttttactggtttctttgatgtagagttcattgtcttcatataccgattatttgtttcagAATCACGAAAGTTAACAGGGACGAAGTTCTCTCGAAGGCAGAAAATGATCTTGCTGCAGTTGTTAATCAATACATTGCAAAACTAGTAAAAGAATTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - -ccatggc
- - - - - - - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - - - tttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatat