1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaacactccgatcctgcctgcccatttccggcctcgcgctctagatcttatcttccgtgactcgaatctgaccgggggaagaatcacttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATG
species | Zea mays |
transcript | GRMZM2G127948_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|211221107|gb|FL365189.1|FL365189
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: TCCAGAGGTCGCGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|211388332|gb|FL320898.1|FL320898
genomic: TCC-GAGGTCG-GCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|211460076|gb|FL334958.1|FL334958
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|211015370|gb|FL327151.1|FL327151
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|211359692|gb|FL340690.1|FL340690
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|211200543|gb|FL334723.1|FL334723
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|149076214|gb|EE164811.2|EE164811
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|148967413|gb|EE018639.2|EE018639
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCCGCGGGAGCCGGAGAGCATGAAGGAEST: gi|74233832|gb|DT641746.1|DT641746
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCC-GCGGGAGCCGGAGAGCATGAAGGA
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGEST: gi|211147965|gb|FL321980.1|FL321980
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
EST: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAG TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
genomic: ACTCCGAGGTCGGCCACAAGAGCCTGCTCAAGAGCGACGACCTCTACCAGgtaaacactc ... cttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAG
tagatcttatcttccgtgactcgaatctgaccgggggaagaatcacttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATG
atctgac putative branch site (score: 1075)
tcacttcc putative PPT
ttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacactccgatcctgcctgcccatttccggcctcgcgctctagatcttatcttccgtgactcgaatctgaccgggggaagaatcacttccaccagTACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTCCGCGAGATCACCGCCAAGCACCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA