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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcttctaactttcctaacaaatcttttcaggaatctgatagatattttgctgatttttctccccgtcttaacagAACCTGCATTGCAGCCATACTTGAAGAACCTCTACACTTACATGTCAATATCAGGGCCTCACTTGGGTTACTGGTACAGTTCAAATTCTTTGTTCAATTC

Basic information

species Zea mays
transcript GRMZM2G127810_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127810_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 3'ss of exon 11
gtctcttctaactttcctaacaaat-cttttcagg-aatctgatagatattttgctgatttt-tctccccgtctt-aacagAACCTGCATTGCAGCCATACTTGAAGAACCTCTACACTTACATGTCAATATCAGGGCCTCACTTGGGTTACTGGTACAGTTCAAATTCTTTGTTCAATTC
|| |  || ||||| |  || |||| | || |||| ||  | ||    ||  |||| | |   |||   | | || || |||||| ||||| || ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||
gtattatccaacttactcaataaattccttccaggcaagttcatctcgatggtgctaactcaatctttgcatgttgaatagAACCCGCATTACAACCATACTTGAAGAACCTGTACACGTACATGTCAATATCAGGCCCACACTTGGGCTACTGGTACAGCTCAAACTCTTTATTCAACTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttttcaggaatctgatagatattttgctgatttttctccccgtcttaacagAACCTGCATTGCAGCCATACTTGAAGAACCTCTACACTTACATGTCAATATCAGGGCCTCACTTGGGTTACTGGTACAGTTCAAATTCTTTGTTCAATTC
                            tgctgat  putative branch site (score: 3)
                                  tttttctccccgtctt  CT-rich tract
                  atagatatttt  TA-rich tract