1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgcaatcgtatattcctatactttttttagataatggaaaaaaacaatctggctccgtcactctactagttttgacatattttgctaccttttttaaaaaaaacattaaaatgaaatgcttgatttcagTTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGATGGGACTTACCAAGAGGAAGGCCAAAAAACTGTTAAAGGAAAGATCTGGG
species | Zea mays |
transcript | GRMZM2G127739_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAG TTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGATEST: gi|71773348|gb|DR971252.1|DR971252
genomic: TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAGgttcgcaatc ... ttgatttcagTTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGAT
EST: TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAG TTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGATEST: gi|71322064|gb|DR797720.1|DR797720
genomic: TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAGgttcgcaatc ... ttgatttcagTTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGAT
EST: TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAG TTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGAT
genomic: TATTGATTAATGGGCGAGAGATTACAAAATCTGAACTGCAAATGCTTAAGgttcgcaatc ... ttgatttcagTTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGAT
acatattttgctaccttttttaaaaaaaacattaaaatgaaatgcttgatttcagTTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGATGGGACTTACCAAGAGGAAGGCCAAAAAACTGTTAAAGGAAAGATCTGGG
ttttttaaaaaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcaatcgtatattcctatactttttttagataatggaaaaaaacaatctggctccgtcactctactagttttgacatattttgctaccttttttaaaaaaaacattaaaatgaaatgcttgatttcagTTGGCAGGAGTCCAATGTGCTGGGAAACCTCACTTTTGGGTGAACGCTGATGGGACTTACCAAGAGGAAGGCCAAAAAACTGTTAAAGGAAAGATCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA