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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttctttaacaaaggtttccatgcatatttctgcatctgcgggttttctgattcgcgtgttgttatcttttattcgatgtagCCGCTAAGGCCATGGGTCGTGACCTACATGTTCACTTCAAG

Basic information

species Zea mays
transcript GRMZM2G127521_T01
intron # 2
splice site 3'
intron type U2

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 190

GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGTCGTGACCTACATGTTCACTTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 140

GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGTCGTGACCTACATGTTCACTTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 369

GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGTCGTGACCTACATGTTCACTTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 169

GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGTCGTGACCTACATGTTCACTTCAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgcatctgcgggttttctgattcgcgtgttgttatcttttattcgatgtagCCGCTAAGGCCATGGGTCGTGACCTACATGTTCACTTCAAG
                  ttctgat  putative branch site (score: 169)
                                      tcttttattc  putative PPT
                                ttgttatcttttatt  TA-rich tract