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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgcatgtgttagaaccatcaaccatgttgtacttctactcagcaatgaagttcctatgatctaatttgtctaataatgattttaacttgtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG

Basic information

species Zea mays
transcript GRMZM2G127141_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 3'ss of exon 2
-----tatgcatgtgttagaaccatcaaccatgttgtacttctactcagcaatgaagttcctatgatctaatttgtctaataatgattttaacttgtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG
     | |   | |||| |  |  ||||    ||   |    |  |   |    |  ||  ||| || ||    |||| ||  ||||||||||    | ||||||||  ||||| |||||||  ||||||| |||||||  ||||| ||||||||||| || ||||||||| ||||||| |||||||| ||||||||||||||| 
ttccttttttttttgttggg-cggtcaagagcgtgtgatacatttttgactcacacatttatatcatata----gtctgatggtgattttaacactggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAATGATGTTTACATTGTTTCTGAGTTGATGGATACTGATCTCCATCAGATCA

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G39190.1 (Glycine max), 3'ss of exon 2
tatgcatgtgttagaaccatcaaccatgttgtacttctac--tcagcaatgaagttc--ctatgatctaatttgtctaataatgattttaacttgtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG
  | |||| |         |  |     || || || |||  |||  | |  | |||   |   | | |   ||   | | |  | ||     | |  |  ||| |  | ||| | || ||  | ||||| || |||   ||  | ||||| ||||||||||||||||||  ||||||||||||||| ||||| ||||| ||  
gtttcatggg---agtttttttattggattttaattttacattcattattagaattcaatttgaaacaaggctgctcacttaccaattacttctctaat-gcagGTGATAGCCCTTAAAGACATTATTCGACCACCACAAAGGTATAACTTCAATGACGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAA

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G07270.1 (Glycine max), 3'ss of exon 2
-tatgcatgtgttagaaccatcaaccatgttgtacttctactcagcaatgaagttccta--tgatctaatttgtctaataatgattttaacttgtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG
 |  |  | |  |      ||    | | |   |  | |  | |||| | || || | |  ||  || | | |  |  | || | || |  |        |||||  |  || | || ||| | || || || |||   |  || ||||| ||||| |||||| ||||| ||||||||||||| |||||||| ||||| ||  
attggattttcctcattgtattttgcttctaaaatctttg-ttagcatttaacttgcaaagtggactgact-gcttgcttatcaatt-atttctccaatgcagATTATGTCCATTAAAGATATTATACGTCCTCCACAGAAGGAAAACTTCAATGATGTGTACCTTGTTTCTGAGTTAATGGACACAGATCTGCATCAAATAA

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G47140.1 (Glycine max), 3'ss of exon 2
tatgcatgtgttagaaccatc-aaccatgttgtacttctac--tcagcaatgaagttc--ctatgatctaatttgtctaataatgattttaacttgtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG-
      |   |  || |   |  |     || || ||||||  |||  | |  | |||   |   | | |   ||   | | |  | ||     | |  |  ||| |  | ||| | || ||  | || || || |||   || || ||||| ||||| ||||||||||||  ||||||||||||||| ||||| ||||| ||   
-----tttcatgggagcttcctgattggattttaattctacaatcattattagaattcaatttgaaacaaggctgctcacttaccaattacttctctaat-gcaggTGATAGCCCTTAAAGACATTATACGACCACCACAGAGGGATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAAT

upper sequence: GRMZM2G127141_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G03670.1 (Glycine max), 3'ss of exon 2
-tatgcatgtgttagaaccatcaaccatgt-tgtacttctac-tcagcaatgaagttccta--tgatctaatttgtctaataatgattttaacttgtg-gtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG
 | || ||||||    |  |||||  |||     |  ||| | | |||| | |  || | |  ||  || | | |  |  | || |   ||| || |      |||||  |  || | || ||| | || || || |||   |  || ||||| ||||| |||||| ||||| ||||||||||||| |||||||| ||||| ||  
gtttg-atgtgt--agattatcaataatgcacaaatatcttcgttagcatttatcttgcaaagtggactgact-gcttggttatcaa--taatttatccaatgcagATTATGTCCATTAAAGATATTATACGTCCTCCACAGAAGGAAAACTTCAATGATGTGTACCTTGTTTCTGAGTTAATGGACACAGATCTGCATCAAATAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211133141|gb|FL299415.1|FL299415
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCCTTAA-GGATGTAATTTCGGCCCCCA-CTAGAGAGAACTTTT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCC-TTAAAGGATGTAATT-CGGCCCCCAACTAGAGAGAACTTTA
EST: gi|67025602|gb|CO454351.1|CO454351
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211133132|gb|FL299406.1|FL299406
EST:     AGCGAACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAATTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|14202559|gb|BG836236.1|BG836236
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|148953292|gb|EE152779.2|EE152779
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211133136|gb|FL299410.1|FL299410
EST:     AKCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|101387050|gb|EB815542.1|EB815542
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|78091137|gb|DV519511.1|DV519511
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|101388156|gb|EB816092.1|EB816092
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|149042024|gb|EE046998.2|EE046998
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|71771178|gb|DR969115.1|DR969115
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|148958758|gb|EC905037.2|EC905037
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|71428063|gb|DR809113.1|DR809113
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|93282255|gb|EB674519.1|EB674519
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|76917706|gb|DV166967.1|DV166967
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211219871|gb|FL299416.1|FL299416
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGSCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|91050576|gb|EB160994.1|EB160994
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|148965635|gb|EE016484.2|EE016484
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211133137|gb|FL299411.1|FL299411
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|31355601|gb|CD439958.1|CD439958
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGCCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211133139|gb|FL299413.1|FL299413
EST:     AGCGAACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAATTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|149077095|gb|EE165753.2|EE165753
EST:     GCGGACGCTCAGGGAAATCAAGCTGCTGCGCCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: GCGGACGCTCAGGGAAATCAAGCTGCTGCGCC-ACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211219876|gb|FL299421.1|FL299421
EST:     AGCGGACGCYCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211219875|gb|FL299420.1|FL299420
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCC-AACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|76010906|gb|DT938076.1|DT938076
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|32839144|gb|CD978825.1|CD978825
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|14202884|gb|BG836561.1|BG836561
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|211133135|gb|FL299409.1|FL299409
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|88755738|gb|DY539879.1|DY539879
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGG
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGG
EST: gi|148963531|gb|EE014552.2|EE014552
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
EST: gi|32836211|gb|CD975889.1|CD975889
EST:     AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAAC                         ATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT
genomic: AGCGGACGCTCAGGGAAATCAAGCTGCTGCGCCACATGGACCATGAGAACgtacgcacgt ... gtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaagttcctatgatctaatttgtctaataatgattttaacttgtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG
                                    ttttaac  putative branch site (score: 2)
               atctaatttgtctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatgcatgtgttagaaccatcaaccatgttgtacttctactcagcaatgaagttcctatgatctaatttgtctaataatgattttaacttgtggtcacagATCCTTGCCTTAAAGGATGTAATTCGGCCCCCAACTAGAGAGAACTTTAATGACGTGTACATTGTTACTGAGTTAATGGATACAGATCTCCATCAGATCG

- tgcatgt
- - - - - - - - - -tcaacca
- - - - - - - - - - - - - tgttgta