1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgataaattctgtctctgaatgtgggatgatgtatgcagtgcagagaacaataaacattccaaaacaatgtaattccaaatggcattatcatctctgcagAGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCGCCGCCAAGGGTTTGGCGTTCCTCCACGACGCCGAGAAGCCGGTCATCTA
species | Zea mays |
transcript | GRMZM2G127031_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAAC AGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCGEST: gi|149100843|gb|EE186937.2|EE186937
genomic: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAACgtgagtacac ... atctctgcagAGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCG
EST: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAAC AGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCGEST: gi|50331432|gb|CO526558.1|CO526558
genomic: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAACgtgagtacac ... atctctgcagAGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCG
EST: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAAC AGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCGEST: gi|148948717|gb|EC898636.2|EC898636
genomic: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAACgtgagtacac ... atctctgcagAGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCG
EST: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAAC AGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCG
genomic: CGTCTACGAGTACATGGAGCACGGCAGCCTGGAGAACCACCTCTTCAAACgtgagtacac ... atctctgcagAGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCG
gaacaataaacattccaaaacaatgtaattccaaatggcattatcatctctgcagAGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCGCCGCCAAGGGTTTGGCGTTCCTCCACGACGCCGAGAAGCCGGTCATCTA
tcatctct CT-rich tract
aaaacaatgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgataaattctgtctctgaatgtgggatgatgtatgcagtgcagagaacaataaacattccaaaacaatgtaattccaaatggcattatcatctctgcagAGATTCCTGCCGTGCTGCCCTGGTCGACCCGACTAAACATTGCAGTAGGCGCCGCCAAGGGTTTGGCGTTCCTCCACGACGCCGAGAAGCCGGTCATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - -ctgaatg
- - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa