Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgccgccatctatatgtgcgattccttcaggtttccttgttgaaggattattttccccccattttcgatgcgggtcgtcgattaacgtactgttgttgtgagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG

Basic information

species Zea mays
transcript GRMZM2G126928_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126928_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g47660.1 (Oryza sativa), 3'ss of exon 2
gtgagcgccgccatctatatgtgcgattccttcaggtttccttgttgaaggattattttccccccattttcgatgcgggtcgtcgattaacgtactgttgttgtgagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG
  | | |||| |||||    || |  || |||  | |||  | | |      || |  | |  |   | ||| ||||| | |  ||||   |  ||    |     ||| ||||||||||| |||||||| |||||||||| |||||||||||||||||| | || ||||||||||||
--gtgagccgtcatct---cgt-cattttcttgcgattttgtgggttttcttttttagttcatcttatctcg-tgcggtttgctgattggggcgct----tgcccggtgtgcagGTACTTCCTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAACGGCCAGATGCTCGCCATCAACGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375230|gb|CF624037.1|CF624037
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|16920669|gb|BM074770.1|BM074770
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211102330|gb|FL044843.1|FL044843
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32914647|gb|CF019459.1|CF019459
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|37422722|gb|CF649076.1|CF649076
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|17931065|gb|BM268025.1|BM268025
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|28909868|gb|CB331139.1|CB331139
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|9794666|gb|BE552974.1|BE552974
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211102334|gb|FL044847.1|FL044847
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|67014317|gb|CO443066.1|CO443066
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|15312848|gb|BI478418.1|BI478418
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32912957|gb|CF017769.1|CF017769
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|18650144|gb|BM498963.1|BM498963
EST:     GGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: GGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|20301158|gb|BQ164101.1|BQ164101
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32868158|gb|CF007840.1|CF007840
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32862998|gb|CF002680.1|CF002680
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099856|gb|FL044834.1|FL044834
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32862779|gb|CF002461.1|CF002461
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099848|gb|FL044826.1|FL044826
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099845|gb|FL044823.1|FL044823
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|18168162|gb|BM338002.1|BM338002
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32851296|gb|CD990977.1|CD990977
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099846|gb|FL044824.1|FL044824
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211102326|gb|FL044839.1|FL044839
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|74238642|gb|DT646556.1|DT646556
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|71310861|gb|DR791735.1|DR791735
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32937131|gb|CF041950.1|CF041950
EST:     CGCATGAAGCTCTGGGCCACCAACGAAGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCCTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|37378143|gb|CF625736.1|CF625736
EST:     CTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|84980828|gb|DW531177.1|DW531177
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|40334660|gb|CK368730.1|CK368730
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|78021903|gb|DV490290.1|DV490290
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211266386|gb|FL049660.1|FL049660
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211102323|gb|FL044836.1|FL044836
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32912986|gb|CF017798.1|CF017798
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211097378|gb|FL044820.1|FL044820
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|44900234|gb|CK826779.1|CK826779
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211102329|gb|FL044842.1|FL044842
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAG
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAG
EST: gi|149111389|gb|EE294892.2|EE294892
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|40334718|gb|CK368788.1|CK368788
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099849|gb|FL044827.1|FL044827
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211263958|gb|FL049655.1|FL049655
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099844|gb|FL044822.1|FL044822
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|5525311|gb|AI861150.1|AI861150
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGCTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|50323515|gb|CO518641.1|CO518641
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32911376|gb|CF016188.1|CF016188
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|67011157|gb|CO439906.1|CO439906
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32913608|gb|CF018420.1|CF018420
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211102327|gb|FL044840.1|FL044840
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32851416|gb|CD991097.1|CD991097
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|60351011|gb|DN217984.1|DN217984
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|50323514|gb|CO518640.1|CO518640
EST:     CAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|20301127|gb|BQ164070.1|BQ164070
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|91047926|gb|EB158344.1|EB158344
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|9954070|gb|BE640653.1|BE640653
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGA
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGA
EST: gi|15632329|gb|BI679422.1|BI679422
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|60354543|gb|DN221516.1|DN221516
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|33094407|gb|CF054401.1|CF054401
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGTGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|84979961|gb|DW530310.1|DW530310
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|116826664|gb|EC870471.1|EC870471
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32907762|gb|CF012575.1|CF012575
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32913609|gb|CF018421.1|CF018421
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|18168944|gb|BM338784.1|BM338784
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|60396344|gb|DN229213.1|DN229213
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|19770443|gb|BQ035164.1|BQ035164
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32859520|gb|CD999201.1|CD999201
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|9254698|gb|BE345166.1|BE345166
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAATAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211263950|gb|FL049647.1|FL049647
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32907763|gb|CF012576.1|CF012576
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|32919773|gb|CF024585.1|CF024585
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|60351010|gb|DN217983.1|DN217983
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099853|gb|FL044831.1|FL044831
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|76294102|gb|DV033670.1|DV033670
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099857|gb|FL044835.1|FL044835
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|71310863|gb|DR791736.1|DR791736
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099850|gb|FL044828.1|FL044828
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|211099847|gb|FL044825.1|FL044825
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|20300454|gb|BQ163397.1|BQ163397
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
EST: gi|84980956|gb|DW531305.1|DW531305
EST:     CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTG                         GTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT
genomic: CGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 350

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 323

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 251

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 374

TGGTGGGGCGCGCGCTGCCGACGCCCGGCGATGAGCACCCCAAGATCTACCGCATGAAGCTCTGGGCCACCAACGAGGTCCGCGCCAAGAGCAAGTTCTGgtgagcgccg ... gagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccccattttcgatgcgggtcgtcgattaacgtactgttgttgtgagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG
                         gattaac  putative branch site (score: 374)
      atttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcgccgccatctatatgtgcgattccttcaggtttccttgttgaaggattattttccccccattttcgatgcgggtcgtcgattaacgtactgttgttgtgagtgcgcagGTACTTCTTGAGGAAGTTGAAGAAGGTTAAGAAGAGCAACGGCCAGGTCCTGGCCATCAACGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA