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...gccttttagttgtatgacttcatatttccttggtgtagctgttgtaatttgtgaccccattaacaagctactgatgatttaccatttattcttgagatagGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCGGAGACAAATATGCAAA
species | Zea mays |
transcript | GRMZM2G126795_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAG GGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCTEST: gi|148974442|gb|EE025221.2|EE025221
genomic: TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAGgtcagtgatt ... cttgagatagGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCT
EST: TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAG GGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCT
genomic: TCGCAAAAACAGCGTCACCGGTCGATCAATTTCGATGTGCATTGCAACAGgtcagtgatt ... cttgagatagGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCT
aatttgtgaccccattaacaagctactgatgatttaccatttattcttgagatagGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCGGAGACAAATATGCAAA
tactgat putative branch site (score: 14)
tttattctt putative PPT
atttaccatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttttagttgtatgacttcatatttccttggtgtagctgttgtaatttgtgaccccattaacaagctactgatgatttaccatttattcttgagatagGGAAATGAAATGGGAGTTAAAGAGTTAGATAGCCTTATGACTTTGATTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCGGAGACAAATATGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - -ttgtatg
- - - - - - - - - ttcatat
- - - - - - - - - - - - - - cttggtg
- - - - - - - - - - - - - - - - - - -gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctactg