1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttcctgagtgggttccctcccccctagaaagctttttatttcccttattatgatttcatgaacaatgtgtggagcttactgaaccttattatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACATCCCCGAAGAAACGATCCGGGAGGCGCTCAAAGTTGTCCTTG
species | Zea mays |
transcript | GRMZM2G126765_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|31558116|gb|CD527328.1|CD527328
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|31558117|gb|CD527329.1|CD527329
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|211128137|gb|FL366473.1|FL366473
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGCCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|78093024|gb|DV521398.1|DV521398
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|18166488|gb|BM336327.1|BM336327
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: CACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|37388689|gb|CF631556.1|CF631556
genomic: CACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|211166824|gb|FL324152.1|FL324152
genomic: TTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGCCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCEST: gi|211055639|gb|FL339119.1|FL339119
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGC
EST: TGCGCACGAACGGGATCCGCCTTCACCAGTTCGCCGTCGAANGGAGCAAG AGTGGTCCGACAGTGCTGGATEST: gi|17929863|gb|BM266823.1|BM266823
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGAT
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|18162825|gb|BM332664.1|BM332664
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: CGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|17930139|gb|BM267099.1|BM267099
genomic: CGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: CGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAA-GGAGCAAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAEST: gi|16920825|gb|BM074849.1|BM074849
genomic: CGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGC-AAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCA
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|18167487|gb|BM337326.1|BM337326
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|76283506|gb|DV023074.1|DV023074
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACEST: gi|78093023|gb|DV521397.1|DV521397
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
EST: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAG AGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
genomic: TGCGCACGAACGGGATCCGGCTTCACCAGTTCGCCGTCGAAGGGAGCAAGgtacgagaac ... ttatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCAC
cttattatgatttcatgaacaatgtgtggagcttactgaaccttattatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACATCCCCGAAGAAACGATCCGGGAGGCGCTCAAAGTTGTCCTTG
agcttac putative branch site (score: 3)
ccttatt putative PPT
ttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcctgagtgggttccctcccccctagaaagctttttatttcccttattatgatttcatgaacaatgtgtggagcttactgaaccttattatccacagAGTGGTCCGACAGTGCTGGATACCATGTCGGCGCAGGAACCATTCGTCCACATCCCCGAAGAAACGATCCGGGAGGCGCTCAAAGTTGTCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaacc