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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcgataaaaccctattcgctgtgatcacaatccaaatttctaactcaaattctactgtcaattttacatcctacccctgacactatttgtgtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC

Basic information

species Zea mays
transcript GRMZM2G126517_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126517_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g39420.1 (Oryza sativa), 3'ss of exon 2
----------------------------------tcgataaaaccctattcgctgtgat--cacaatccaaatttctaact--caaattctactgtcaattttacatcctacccctgacactatttgtgtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC
                                    |||| |     |   | |    |     |  |   ||   ||  |   |  | |||      ||| | ||    || || || | | || ||    | |||||||||| |  ||| ||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||  ||||| 
gtgagtcctgtgatttttcctgtgactcggagatcagatacatgttcaactgttcaagtgctggaggcgtgatccgtagttgctagctactatgaattattctccaattaacaccggataattttcgtaatgtgatagGCCTTAGCGGCGAGCAATTGAAGAGCTTGGCTGTAAGTGGAAGACAGTTTCAGAAGACGGCTAGAAGGGATATTGCACATGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211075732|gb|FL350793.1|FL350793
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACG-AGTCC-TCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211315779|gb|FL309515.1|FL309515
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGYCT-TCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211002330|gb|FL358914.1|FL358914
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|67038503|gb|CO464823.1|CO464823
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211098559|gb|FL329018.1|FL329018
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211531512|gb|FL328883.1|FL328883
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGA-TCCTTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|149082843|gb|EE172069.2|EE172069
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211522432|gb|FL327537.1|FL327537
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211442644|gb|FL343500.1|FL343500
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGNAGTCC-TCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211526413|gb|FL361961.1|FL361961
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGASTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211469725|gb|FL319610.1|FL319610
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211193875|gb|FL364459.1|FL364459
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|149015839|gb|EE045506.2|EE045506
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211370472|gb|FL346947.1|FL346947
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211152952|gb|FL361222.1|FL361222
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211177454|gb|FL359127.1|FL359127
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211327335|gb|FL364053.1|FL364053
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211483892|gb|FL352027.1|FL352027
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211419354|gb|FL322259.1|FL322259
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATMAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211088384|gb|FL316163.1|FL316163
EST:     GGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCC-TCCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTT
genomic: GGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTC-ACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTT
EST: gi|211350028|gb|FL354311.1|FL354311
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211103326|gb|FL320696.1|FL320696
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|31355893|gb|CD440250.1|CD440250
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTAGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGGTTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211385441|gb|FL308637.1|FL308637
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|78085709|gb|DV514102.1|DV514102
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211308601|gb|FL359174.1|FL359174
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCC-TCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211023720|gb|FL334133.1|FL334133
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211239930|gb|FL353209.1|FL353209
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211033669|gb|FL344494.1|FL344494
EST:     GGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAKTCC-TCCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTT
genomic: GGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTC-ACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTT
EST: gi|211526420|gb|FL361968.1|FL361968
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211383364|gb|FL329669.1|FL329669
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTAYAAGYGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211023235|gb|FL319676.1|FL319676
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211115835|gb|FL357318.1|FL357318
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211386536|gb|FL356614.1|FL356614
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211216455|gb|FL358323.1|FL358323
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211472964|gb|FL344042.1|FL344042
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211522504|gb|FL328840.1|FL328840
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211267860|gb|FL346397.1|FL346397
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211028268|gb|FL325354.1|FL325354
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCC-TCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211229181|gb|FL350913.1|FL350913
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211370106|gb|FL332774.1|FL332774
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211472115|gb|FL315175.1|FL315175
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211404920|gb|FL353800.1|FL353800
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211258208|gb|FL352264.1|FL352264
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACG-AGTCCTTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|74236392|gb|DT644306.1|DT644306
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211338223|gb|FL361344.1|FL361344
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211526419|gb|FL361967.1|FL361967
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211500698|gb|FL332814.1|FL332814
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGAC-GAGTCCTTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211420492|gb|FL364949.1|FL364949
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211526578|gb|FL367182.1|FL367182
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGAC-GAGT-CCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|31355559|gb|CD439916.1|CD439916
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTAGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGGTTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|211422400|gb|FL340223.1|FL340223
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACG-AGTCC-TCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|71764027|gb|DR961964.1|DR961964
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
EST: gi|101391313|gb|EB817591.1|EB817591
EST:     CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCG                         GCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC
genomic: CGGGGCTATCCCTGCAACCATAGCCGTCCTGGACGGAGTCCCTCACGTCGgtcagttctc ... gtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattctactgtcaattttacatcctacccctgacactatttgtgtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC
                             ccctgac  putative branch site (score: 3)
              aattttacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcgataaaaccctattcgctgtgatcacaatccaaatttctaactcaaattctactgtcaattttacatcctacccctgacactatttgtgtgataatagGCCTTAACAACGAACAATTGAAGAGATTGGCTATAAGTGGAAGGCAATTTCAGAAGACGGCTAGAAGGGATATTGTCCATGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- gataaaac
- - - - - - - - cgctgtg
- - - - - - - - - - - -atcacaa
- - - - - - - - - - - - - - - - - - - - -aactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - tctactg