1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttatcttgtatcggtgtttatattcaggtctagtgtccttatattaaatatagtataattcataacaatcttaacttgttttgacacgtcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGCGCTTTGGTACAATTGAAGCTTGGACAG
species | Zea mays |
transcript | GRMZM2G126446_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAG GTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGEST: gi|18649788|gb|BM498607.1|BM498607
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
EST: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAG GTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGEST: gi|89106137|gb|DY576354.1|DY576354
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
EST: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAG GTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGEST: gi|149077804|gb|EE166528.2|EE166528
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
EST: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAG GTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGEST: gi|211292829|gb|FL302055.1|FL302055
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
EST: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAG GTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGEST: gi|88746185|gb|DY530326.1|DY530326
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
EST: GGAGGAAATTTCTATGAAGCTCAACAAGTGTACAAGTCACCCAGCGCAGG GTATATTGCTGTCCATAAGTATTCAAAAGCCTTGGACATCCTTCAATCGGGEST: gi|14883649|gb|BI273468.1|BI273468
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
EST: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAG GTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGEST: gi|211292830|gb|FL302056.1|FL302056
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
EST: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAG GTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
genomic: GGAGGAAATTTCTATGAAGCTCAACAAATGTACAAGTCAACCAGCGCAAGgtactatgta ... tcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGG
ttaaatatagtataattcataacaatcttaacttgttttgacacgtcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGCGCTTTGGTACAATTGAAGCTTGGACAG
tatagtataattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttatcttgtatcggtgtttatattcaggtctagtgtccttatattaaatatagtataattcataacaatcttaacttgttttgacacgtcttaaatagGTATATTGCTGTCCATAAGTATTCAGAAGCCTTGGACATCCTTCAATCAGGCGCTTTGGTACAATTGAAGCTTGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - cttgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataacaa