1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtggcttttgtctatttcatcgatagctacacctacaagtcacatgacggaaaaggatttccaccaattatatactcacaaatatatattgttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGCAGGCACTGCAACTGCACTGATCCTTGTTGGAGGGGAGACCATGAAGCT
species | Zea mays |
transcript | GRMZM2G125832_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|71426295|gb|DR807345.1|DR807345
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|89764303|gb|DY691160.1|DY691160
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|148995053|gb|EE034367.2|EE034367
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|74233731|gb|DT641645.1|DT641645
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|50325971|gb|CO521097.1|CO521097
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|78085037|gb|DV513430.1|DV513430
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GGCAGGGAGGAGGTACAACGGATATGTTGAGCTTGCACAGGCAGGATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAGCTATTTATCTCTCGGEST: gi|78113400|gb|DV531792.1|DV531792
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCCACTATTTATCTCTCGGEST: gi|148980665|gb|EE027283.2|EE027283
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|149071634|gb|EE160029.2|EE160029
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|91055399|gb|EB165817.1|EB165817
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGGACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGEST: gi|93012512|gb|EB638032.1|EB638032
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GA-AAAAA-TGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|71439655|gb|DR820705.1|DR820705
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|101401412|gb|EB822383.1|EB822383
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|148941768|gb|EC886729.2|EC886729
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|71772490|gb|DR970422.1|DR970422
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|74243040|gb|DT650954.1|DT650954
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|76914137|gb|DV165420.1|DV165420
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|76010987|gb|DT938157.1|DT938157
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|74233140|gb|DT641054.1|DT641054
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|78085547|gb|DV513940.1|DV513940
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|211265514|gb|FL351842.1|FL351842
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|211101474|gb|FL457328.1|FL457328
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAA--TGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|149106721|gb|EE188617.2|EE188617
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|91875166|gb|EB405123.1|EB405123
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACCACAGATATGTTGAGCTTGCCCAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTTTCTCTCGGEST: gi|71426898|gb|DR807948.1|DR807948
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|71444351|gb|DR825401.1|DR825401
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|74240540|gb|DT648454.1|DT648454
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGEST: gi|50331730|gb|CO526856.1|CO526856
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|93281689|gb|EB673953.1|EB673953
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|88756124|gb|DY540265.1|DY540265
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGGTCTTTTCCCAACTATTTATCTCTCGGEST: gi|149001882|gb|EE038834.2|EE038834
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|71325403|gb|DR799382.1|DR799382
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGEST: gi|89756369|gb|DY686419.1|DY686419
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTEST: gi|91054811|gb|EB165229.1|EB165229
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCT
EST: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
gacggaaaaggatttccaccaattatatactcacaaatatatattgttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGCAGGCACTGCAACTGCACTGATCCTTGTTGGAGGGGAGACCATGAAGCT
tactcac putative branch site (score: 51)
ttcatcc putative PPT
aattatatactcacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcttttgtctatttcatcgatagctacacctacaagtcacatgacggaaaaggatttccaccaattatatactcacaaatatatattgttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGCAGGCACTGCAACTGCACTGATCCTTGTTGGAGGGGAGACCATGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -gcttttg
- - - - - - - - - - - - -gctacac
- - - - - - - - - - - - - - - - - - - - cacatga
- - - - - - - - - - - - - - - - - - - - - - - - -gaaaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaaa