1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttaactgtatttctgttatgcaaataatagaaatgggggtatccttcctctcagcgagcataatctatttgctgtgatgatgtatatactttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCATGTCAAGGCAGAGAACGGAGTCATTCTCACCAAGCCCTTCCTTGATGT
species | Zea mays |
transcript | GRMZM2G125556_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|76285485|gb|DV025053.1|DV025053
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041272|gb|FL124819.1|FL124819
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211464236|gb|FL298400.1|FL298400
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041270|gb|FL124817.1|FL124817
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041278|gb|FL124825.1|FL124825
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211464240|gb|FL298404.1|FL298404
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041276|gb|FL124823.1|FL124823
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAA-- ---C-GAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211464238|gb|FL298402.1|FL298402
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: -GGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211466770|gb|FL298415.1|FL298415
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041277|gb|FL124824.1|FL124824
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGNAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAA-- ---C-GAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041274|gb|FL124821.1|FL124821
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211475759|gb|FL124816.1|FL124816
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211475756|gb|FL124813.1|FL124813
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041273|gb|FL124820.1|FL124820
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GG-AAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211041271|gb|FL124818.1|FL124818
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211475757|gb|FL124814.1|FL124814
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|93282356|gb|EB674620.1|EB674620
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211466771|gb|FL298416.1|FL298416
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCEST: gi|211464237|gb|FL298401.1|FL298401
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
EST: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACG GTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
genomic: GGGAAAGCCGTGTTGCAAGAAGGGGAATTCCGCTGCGAGATCCGTGAACGgtcagttcgc ... tttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGC
ttcctctcagcgagcataatctatttgctgtgatgatgtatatactttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCATGTCAAGGCAGAGAACGGAGTCATTCTCACCAAGCCCTTCCTTGATGT
tactttctt CT-rich tract
ataatctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaactgtatttctgttatgcaaataatagaaatgggggtatccttcctctcagcgagcataatctatttgctgtgatgatgtatatactttcttgcagGTTCAGAGATGGCACAGACGGTGTTCACCCCCTCTTTGGAAGCGATGAAGCATGTCAAGGCAGAGAACGGAGTCATTCTCACCAAGCCCTTCCTTGATGT
- - - tgtattt
- - - - - - - - ttatgca
- - - - - - - - - - - - - aatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat