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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctcccccttgcccaatcctcagatctgcctttccctgggtgattggattgcgaagtaataatatggtattgattcacatgtgtgatctccctgggttgtatgtggatgcgcagGTGGATTTGGAGGGAACGTTGGGCATGACCCGCATGTCCTCTACACGCTTAGCGCCGTGCAGGTCCTCTGCCTTTTCGATCGGCTCGATGTCCTTGACGT

Basic information

species Zea mays
transcript GRMZM2G124557_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124557_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g40140.1 (Oryza sativa), 3'ss of exon 2
----------------------gtacctcccccttgcccaatcctcagatctgcctttccctg-------ggtgattggat---tgcgaagtaataatatggtattga-ttcacatgtgtgatctccctgggtt-gtatgtggatgc-gcagGTGGATTTGGAGGGAACGTTGGGCATGACCCGCATGTCCTCTACACGCTTAGCGCCGTGCAGGTCCTCTGCCTTTTCGATCGGCTCGATGTCCTTGACGT
                      | |        |||    ||     |||      ||    |       |||  ||||||   || || |  ||  | || | |||| || |  |||| | |         || | || ||| ||  ||||||||||| || || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| || |  || || ||
gtaccacgagaaggagggggtggaattgattgattgattgattgattgattgattgttgttggtggtggtggtctttggatccttgagaggagatg-tgtgttcttgacttgatctgtgcgtttggttcatcttcggatttgggtgttgcagGTGGATTCGGGGGAAACGTTGGGCATGACGCGCATGTCCTCTACACGCTCAGCGCCGTGCAGGTCCTGTGCCTCTTTGATCGGCTTGACGCTCTCGATGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatggtattgattcacatgtgtgatctccctgggttgtatgtggatgcgcagGTGGATTTGGAGGGAACGTTGGGCATGACCCGCATGTCCTCTACACGCTTAGCGCCGTGCAGGTCCTCTGCCTTTTCGATCGGCTCGATGTCCTTGACGT
        tattgat  putative branch site (score: 3)
        tattgatt  TA-rich tract