Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG

Basic information

species Zea mays
transcript GRMZM2G124434_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 2
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                             | ||| | |   |  |  |||  ||  |   ||   || || |   ||          |||||      | | ||||||   | | |      |  |||||   |||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || || ||| |||||||||||||||||||||||||||||
----------------------gtccggctctctcttttttttttacatatttttactgtta---tatctcagcttagcctgagcttgttttatccatatcaattcatttgttacaac----taatggtcctacagGTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G30400.1 (Glycine max), 3'ss of exon 1
gtatatatacaaatatat-tgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
     |   | |  ||      || |||| ||  ||  |    |   ||  | ||      | ||   || |  ||| |||   | |  |  | |       ||| | | |  || | |||  ||         |||||| || |||||||| ||||| || || |||||||| || || ||| | || || ||||||||||||||||| || ||||| ||||| ||||||
----gttagccatcatgcacatcatttcaattatttgtttttggaccaaacattt-----atgat---gcggtggctgttttgattagatgatgatgtgttttatgcgttctgaaaaatatttttc--------cagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGAAACTAATGTGAGCTTGAAGGAGTCCGATGCATGGCCAGCTGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G36740.3 (Glycine max), 3'ss of exon 2
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
               || ||    | ||| |  ||||       ||  |   |  | ||  | | ||     || | | ||  |  | | |   | ||     || ||||||   |     |   || | |  |||||| || |||||||| ||||| || || |||||||| ||||| ||| | || || ||||| ||||||||||| |||||||| ||||| ||||||
-------------gttagtgatggtccatatcatttcaattatatgttttg-tgactaaacattttatgatgtggtgtctgttttgattatatgatgatgtgttttatgcattccaa----aaaatgtttttccagGTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTCAAACAGTTGGAAACTAATGTTAGCTTGAAGGAGTCTGATGCATGGCCAGCTGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G43410.1 (Glycine max), 3'ss of exon 2
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                   | || ||||||||         ||    || |  || |    ||| |   | ||    | |   | | ||     |   |   || | ||  |  | || | |||||  | |   ||||| || |||||||| ||||| || || || || || ||||| ||| | || ||||||||||| || ||||| |||||||||||||||||||||
-------------------gtca-ttcattttgaacaaacatgtgttattatgtcactttcaat-tgcataatatagtct---ttatgtcgctgacatagtgatccttgttttttggt-ttattttttttta--agGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGAGACAAATGTGAGTTTAAAGGAGTCTGATGCCTGGCCTGCTGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G43400.1 (Glycine max), 3'ss of exon 2
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                   | || ||||||||         ||    || |  || |    ||| |   | ||    | |   ||  | | ||| ||     || | ||  |  | || | |||||    |   ||||| || |||||||| ||||| || || || ||||| ||||| ||| | || ||||||||||| |||||||| |||||||||||||||||||||
-------------------gtca-ttcattttaaacaaacatgtgttattatgtcactttcaat-tgcataatatagtctttatgtcgctgtcatag---tgatccttgttttttggt-ttatttt---ttttaagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA03G40720.1 (Glycine max), 3'ss of exon 2
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                   | || ||||||||         ||    || |  || |    ||| |   ||||    | |   ||  |   ||| ||     || | ||  |  | || | |||||  |     ||||| || |||||||| ||||| || || || ||||| ||||||||| | || ||||||||||| |||||||| |||||||||||||||||||||
-------------------gtca-ttcattttgaacaaacatgtgttattatgtcactttcaat-tgcatgatatagtctttatgtcgccgtcatag---tgatccttgttttttggt-ttatttttttt----agGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAGCAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 1
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGC---TTGAAGGAATCTGATGCCTGGCCTGCTGAG
                     || ||  || |  |  ||  ||  |  |   ||      |    |   ||||   |   |  || |||  |     | |||      |  || | |           | |  |||||| ||||||||||| || || |||||||||||||| |||||||| || || ||  ||||||||   |||||||| |||||||| ||||| |||  |
-----------------agagcaatttgttgttctgatgtgtgtagggtcgattt----atgtcttttttgatatcacaagtatggagtggt-----agcctgagtgggtttagtgg----------atgtttcagGTTTTTCTATGCCTCAAGCGCGTGCATTTACCCTGAATTCAAGCAACTCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 3'ss of exon 1
gtatatatacaaatatattgccacttcat-tttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCT---TGAAGGAATCTGATGCCTGGCCTGCTGAG
                        ||||| ||| | | |   |     | |||||      ||   |  |||  | | |||   ||||   |    ||  |  |||      |   | | |   |   |  | ||||||| ||||||||||| || || || ||||||||||||||||||||||| || ||  |||||||||   |||| ||||| ||||| |||||||||  |
-----------------------attcatatttgtatttttattcctcacaactt------tatgtttcctgtagatgttt---tgaaaactctggagttctgatt-----gtggaatttttggtggaggattgcagGTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ36458 (Selaginella moellendorffii), 3'ss of exon 1
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                                                           |||  ||   || || |  |    ||   ||  ||| ||         || |    | | || || | | ||  ||| || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || |||
-----------------------------------------------------------gtagcctg--tggtgtttctaagttgttcttcccaaggatt-------tggagctcactctctttcttggcttccagATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 1
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                                                           |||  ||   ||||| |  |    ||   ||  ||| ||     ||      | |   | ||  || |  ||  ||| || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || || 
-----------------------------------------------------------gtagcctg--tgatgtttctaagttgttcttcccaagga-----tttggagctcactctctcgcttgg--cttccagATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCAGCAGAA

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ10353 (Selaginella moellendorffii), 3'ss of exon 1
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                                                           |||  ||   ||||| |  |    ||   ||  ||| ||         || |    | | ||  | | | ||  ||| || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || |||
-----------------------------------------------------------gtagcctg--tgatgtttctaagttgttcttcccaaggatt-------tggagctcactctctctcttggcttccagATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ09286 (Selaginella moellendorffii), 3'ss of exon 1
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcata---atagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                                                                                       ||||   || | | | ||  | | |    ||  |  | |||   |||  ||| || |||||||| || || |||||||||||||| || |||||||| ||||| || || |||||  | |||||||| ||||| ||||| || |||
---------------------------------------------------------------------------------------gtttgggaaaatctttttttttccttggtattttgacttttccttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAAACGAACGTGAGTCTCAAGGAATCGGATGCTTGGCCAGCAGAG

upper sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ18599 (Selaginella moellendorffii), 3'ss of exon 1
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
                                                           |||  ||   ||||| |  |    ||   ||  ||| ||         || |    | | || || | | ||  ||| || || ||||| || ||||||||||||||||| ||||| |||||||| || || || ||||| |||||||| || ||||| ||||| || |||
-----------------------------------------------------------gtagcctg--tgatgtttctaagttgttcttcccaaggatt-------tggagctcactctctttcttggcttccagATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148941150|gb|EC886023.2|EC886023
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149075250|gb|EE163754.2|EE163754
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148986030|gb|EE029877.2|EE029877
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|50327568|gb|CO522694.1|CO522694
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148944625|gb|EC889756.2|EC889756
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148974477|gb|EE025259.2|EE025259
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149074869|gb|EE163309.2|EE163309
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149077964|gb|EE166695.2|EE166695
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149085930|gb|EE175457.2|EE175457
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|211466313|gb|FL049749.1|FL049749
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTT
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTT
EST: gi|76014792|gb|DT941962.1|DT941962
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|31405870|gb|CD484602.1|CD484602
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|211471384|gb|FL049793.1|FL049793
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGGGAAGAG                         GTTCTTCTATGCCTCGAGTGGATGCATTTACCCTGAGTTCAAGCAGCTTGG
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTG-
EST: gi|211471375|gb|FL049784.1|FL049784
EST:     ATGATCAGTTTTTACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCT-CTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTG-
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|50334752|gb|CO529878.1|CO529878
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148948429|gb|EC893946.2|EC893946
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148943841|gb|EC888919.2|EC888919
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|67016994|gb|CO445743.1|CO445743
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTCGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149080013|gb|EE169034.2|EE169034
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148943579|gb|EC888642.2|EC888642
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149004990|gb|EE039510.2|EE039510
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|71432081|gb|DR813131.1|DR813131
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|211463783|gb|FL049738.1|FL049738
EST:     TGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATG
genomic: TGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGG-TGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATG
EST: gi|101393240|gb|EB818551.1|EB818551
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|22545833|gb|BU098207.1|BU098207
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTCGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|30031706|gb|CB833557.1|CB833557
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|31353274|gb|CD437631.1|CD437631
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149004882|gb|EE039392.2|EE039392
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|91877152|gb|EB407109.1|EB407109
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|211468844|gb|FL049771.1|FL049771
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTCGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148959388|gb|EE010762.2|EE010762
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|211466319|gb|FL049755.1|FL049755
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|71766426|gb|DR964363.1|DR964363
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|78110081|gb|DV528496.1|DV528496
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148940561|gb|EC885363.2|EC885363
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|211466327|gb|FL049763.1|FL049763
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAG
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAG
EST: gi|148930700|gb|EC872950.2|EC872950
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|149087879|gb|EE177150.2|EE177150
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|76284993|gb|DV024561.1|DV024561
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|71436318|gb|DR817368.1|DR817368
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|148932049|gb|EC875384.2|EC875384
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|31361616|gb|CD445973.1|CD445973
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|71766875|gb|DR964812.1|DR964812
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|74242204|gb|DT650118.1|DT650118
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|76017298|gb|DT944468.1|DT944468
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|71769936|gb|DR967873.1|DR967873
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|6636925|gb|AW261197.1|AW261197
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGCGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTA
EST: gi|149099241|gb|EE185272.2|EE185272
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|31354646|gb|CD439003.1|CD439003
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|211466324|gb|FL049760.1|FL049760
EST:     ATGATCAGTTTTA-CATGCTGGAGGCTGCACTTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTT
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTT
EST: gi|78116195|gb|DV534582.1|DV534582
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|71429280|gb|DR810330.1|DR810330
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
EST: gi|76282387|gb|DV021955.1|DV021955
EST:     ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAG                         GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA
genomic: ATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 155

GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 507

GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 416

GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 195

GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatac ... ggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG
 atttgac  putative branch site (score: 195)
                             ataatagtatcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcagGTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA