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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcacaatcaccatgccgaaatccacaaactatttccattcgataggcttactgtgctgtattcatgacctgactgttttatctaactgtggtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCAAGGCTGTGAAGTCTGGGTCAGTAAAGAAGACCAAGAAGATCCGCACGTC

Basic information

species Zea mays
transcript GRMZM2G124411_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 3'ss of exon 2
--gcacaatca--ccatgccgaaatccacaaactatttccattcgataggcttactgtgctgt----attcatgacctgactgttttatctaactgtggtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCAAGGCTGTGAAGTCTGGGTCAGTAAAGAAGA---CCAAGAAGATCCGCACGTC
  | | ||| |  | |||     ||           ||   |    |  ||||  ||     |    || ||||| |||| |||||||| |        | ||  |||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||| ||||||||| |||  |||||||   ||||||||||||||||   
ttgtataattagtctatgaatccatttctgcctggcttttttaacctcagcttggtgcttaattaagatgcatgaactgattgttttattt--------tgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCAAGGCTGTTAAGTCTGGGACAGCCAAGAAGACGACCAAGAAGATCCGCAC---

upper sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 2
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 1
------gcacaatcaccatgccgaa-atccacaaactatttccattcgataggc-ttactgtgctgtattcatgacctgactgttttatctaactgtggtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCAAGGCTGTGAAGTCTGGGTCAGT------AAAGAAGACCAAGAAGATCCGCACGTC
          |  |    | | ||  || ||     ||||    |  |||  |  | |  ||  | |||  |||     ||| | |  | ||  |||  ||||   || || | || ||||||||| |||| | ||| || ||||||||||||  || |||||||||||||||||   ||        ||||||  ||| |||||  |      
ttttgtctgtagacgtgtttctgagtattcatg---tattgaagtcagatttgtatcaaagtattatatg-atgcttaaactctctgttgta--tgtaatttg--cagTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211206440|gb|FL253315.1|FL253315
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211214149|gb|FL253353.1|FL253353
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|24773553|gb|CA408807.1|CA408807
EST:     TCAGGAGAGTTTCGCAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: TCAGGAGAGTTTCG-AGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211211588|gb|FL253348.1|FL253348
EST:     TCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTG-CMAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: TCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211209019|gb|FL253330.1|FL253330
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|24773944|gb|CA409198.1|CA409198
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|5343097|gb|AI795507.1|AI795507
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|20802907|gb|BQ293957.1|BQ293957
EST:     GGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: GGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211206447|gb|FL253322.1|FL253322
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211214158|gb|FL253362.1|FL253362
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|20336923|gb|BQ172553.1|BQ172553
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211206442|gb|FL253317.1|FL253317
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|14996984|gb|BI319102.1|BI319102
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTACCAAGAAGGGTCATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211211583|gb|FL253343.1|FL253343
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|60337088|gb|DN204061.1|DN204061
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211206444|gb|FL253319.1|FL253319
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CWTGCTCCTGCCAAGAAGGGTRATGCCAAGACCCAGRCCTTGAAGGTTGCC
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagC-TGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCC
EST: gi|211458314|gb|FL472589.1|FL472589
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211211585|gb|FL253345.1|FL253345
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|4887531|gb|AI677630.1|AI677630
EST:     TCAGGA-AGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: TCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211211584|gb|FL253344.1|FL253344
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|24934734|gb|CA452952.1|CA452952
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|19770427|gb|BQ035148.1|BQ035148
EST:     GGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: GGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|71763303|gb|DR961240.1|DR961240
EST:     CAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: CAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211211578|gb|FL253338.1|FL253338
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|32863611|gb|CF003293.1|CF003293
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211209015|gb|FL253326.1|FL253326
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|29945651|gb|CB815748.1|CB815748
EST:     GTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGAT-CCACAGACCCAGNCCTTGAAGGTTGCC
genomic: GTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCA-AGACCCAGGCCTTGAAGGTTGCC
EST: gi|78026888|gb|DV495275.1|DV495275
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211206435|gb|FL253310.1|FL253310
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211214150|gb|FL253354.1|FL253354
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|26557593|gb|CA829828.1|CA829828
EST:     GAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: GAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211209012|gb|FL253323.1|FL253323
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|4826114|gb|AI667742.1|AI667742
EST:     CTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: CTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|76016456|gb|DT943626.1|DT943626
EST:     CAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: CAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|24774087|gb|CA409341.1|CA409341
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211214152|gb|FL253356.1|FL253356
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211211589|gb|FL253349.1|FL253349
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|71436907|gb|DR817957.1|DR817957
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211203870|gb|FL253302.1|FL253302
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211206445|gb|FL253320.1|FL253320
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|78113324|gb|DV531716.1|DV531716
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211211582|gb|FL253342.1|FL253342
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211209026|gb|FL253337.1|FL253337
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
EST: gi|211214154|gb|FL253358.1|FL253358
EST:     AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA
genomic: AGTTCAGGAGAGTTTCGAGAAGCTGAAATGGCTCCTAAAGgtacacgcct ... gtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttactgtgctgtattcatgacctgactgttttatctaactgtggtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCAAGGCTGTGAAGTCTGGGTCAGTAAAGAAGACCAAGAAGATCCGCACGTC
                                  atctaac  putative branch site (score: 2)
                              ttttatctaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcacaatcaccatgccgaaatccacaaactatttccattcgataggcttactgtgctgtattcatgacctgactgttttatctaactgtggtttgattagCTGCTCCTGCCAAGAAGGGTGATGCCAAGACCCAGGCCTTGAAGGTTGCCAAGGCTGTGAAGTCTGGGTCAGTAAAGAAGACCAAGAAGATCCGCACGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG