Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211125807|gb|FL321198.1|FL321198EST: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGACAG GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
EST:
gi|211359478|gb|FL332719.1|FL332719EST: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
EST:
gi|71298203|gb|DR785078.1|DR785078EST: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGGTGAGGATGAA
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGGTGAGGATGAA
EST:
gi|211477983|gb|FL231678.1|FL231678EST: TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG GTTGGAGCATGCTTGGTTAGC
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGC
EST:
gi|211477979|gb|FL231674.1|FL231674EST: TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG -TTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
EST:
gi|211477985|gb|FL231680.1|FL231680EST: TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG GTTGGAGCATGC
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGC
EST:
gi|211477978|gb|FL231673.1|FL231673EST: TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAA-TCCTAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acctatgtcaatgatcaaaatatgaattgattgatatgacatgcatttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGGTGAGGATGAAGCTGTACTGCTGCAGAATGCTCTGTATACACTGCTATGCATTTGTGTAT
gattgat putative branch site (score: 4)
tttcactc putative PPT
aaaatatgaattgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatatttatcacggtatgttagataatgtagtttttcttcctttacctatgtcaatgatcaaaatatgaattgattgatatgacatgcatttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGGTGAGGATGAAGCTGTACTGCTGCAGAATGCTCTGTATACACTGCTATGCATTTGTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG