Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78085599|gb|DV513992.1|DV513992EST: ACGGCCGCAAGATCCACGTCTCCGTCAAGCAAGAGACATCGCGCGTCCTG GGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAG
genomic: ACGGCCGCAAGATCCACGTCTCCGTCAAGCAAGAGACATCGCGCGTCCTGgtgcgtgtgc ... tgcaatgcagGGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAG
EST:
gi|154130487|gb|EC872220.2|EC872220EST: ACGGCCGCAAGATCCACGTCTCCGTCAAGCAAGAGACATCGCGCGTCCTG GGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAG
genomic: ACGGCCGCAAGATCCACGTCTCCGTCAAGCAAGAGACATCGCGCGTCCTGgtgcgtgtgc ... tgcaatgcagGGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAG
EST:
gi|78104413|gb|DV522831.1|DV522831EST: ACGGCCGCAAGATCCACGTCTCCGTCAAGCAAGAGACATCGCGCGTCCTG GGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAG
genomic: ACGGCCGCAAGATCCACGTCTCCGTCAAGCAAGAGACATCGCGCGTCCTGgtgcgtgtgc ... tgcaatgcagGGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAG
EST:
gi|211396429|gb|FL326121.1|FL326121EST: CGGCCGCAAGATCCACGTCTCCCGTCA-GCAAGAGACATCGCGCGTCCTG GGCAACCTCGCGTGGGCGTACATGCAGCAGCGCA
genomic: CGGCCGCAAGATCCACGTCTCC-GTCAAGCAAGAGACATCGCGCGTCCTGgtgcgtgtgc ... tgcaatgcagGGCAACCTCGCGTGGGCGTACATGCAGCAGCGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacgtccagtgcgtggcatagctaataagcttcgccggacatgcatgcaatgcagGGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAGGTGGTGTACCGGAAGGCGCAGATGATCGACCCGGACGCCAACAAGGCGT
agctaat putative branch site (score: 3)
taataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgtgtgcatgcggcggtccccagaccccagcctgttccagagtccacacgtccagtgcgtggcatagctaataagcttcgccggacatgcatgcaatgcagGGCAACCTCGCGTGGGCGTACATGCAGCAGCGCAACTTCATGGCGGCGGAGGTGGTGTACCGGAAGGCGCAGATGATCGACCCGGACGCCAACAAGGCGT
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