1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatggcggatgatcccctcgtcacggtggtacttaaatccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGGTGGACAGCTGAAACCCTGTTGCCATTTCG
species | Zea mays |
transcript | GRMZM2G123624_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211210947|gb|FL341928.1|FL341928
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCG
tccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGGTGGACAGCTGAAACCCTGTTGCCATTTCG
tgctaac putative branch site (score: 1)
ccttgtcgttcttccc putative PPT
taacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatggcggatgatcccctcgtcacggtggtacttaaatccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCGGTGGACAGCTGAAACCCTGTTGCCATTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA