1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatggcggatgatcccctcgtcacggtggtacttaaatccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG
species | Zea mays |
transcript | GRMZM2G123624_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211210947|gb|FL341928.1|FL341928
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGEST: gi|19822322|gb|BQ048346.1|BQ048346
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCG
EST: ACCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211460542|gb|FL352486.1|FL352486
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211492538|gb|FL352068.1|FL352068
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|76935690|gb|DV174431.1|DV174431
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|149085095|gb|EE174602.2|EE174602
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGACAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|88753110|gb|DY537251.1|DY537251
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|71765024|gb|DR962961.1|DR962961
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211152488|gb|FL335975.1|FL335975
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211050403|gb|FL363821.1|FL363821
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211178619|gb|FL327172.1|FL327172
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|71768414|gb|DR966351.1|DR966351
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|33102856|gb|CF062816.1|CF062816
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AGCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211163871|gb|FL345465.1|FL345465
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211026561|gb|FL468573.1|FL468573
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: TACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211265433|gb|FL346828.1|FL346828
genomic: TACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCGAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGNATATAGNTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|71434707|gb|DR815757.1|DR815757
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211177242|gb|FL341479.1|FL341479
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211244356|gb|FL352760.1|FL352760
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211543242|gb|FL317104.1|FL317104
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211520282|gb|FL356688.1|FL356688
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211181873|gb|FL366111.1|FL366111
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211023761|gb|FL452145.1|FL452145
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211293997|gb|FL361747.1|FL361747
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|33102965|gb|CF062925.1|CF062925
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AGCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|71328410|gb|DR800842.1|DR800842
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211389151|gb|FL356154.1|FL356154
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211430360|gb|FL347862.1|FL347862
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAWACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|74244904|gb|DT652818.1|DT652818
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211494820|gb|FL326686.1|FL326686
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211293996|gb|FL361746.1|FL361746
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|74239024|gb|DT646938.1|DT646938
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211470983|gb|FL363735.1|FL363735
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211314173|gb|FL331842.1|FL331842
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211529255|gb|FL011602.1|FL011602
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: ACCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGEST: gi|211250291|gb|FL313176.1|FL313176
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
tccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG
tgctaac putative branch site (score: 61)
ccttgtcgttcttccc putative PPT
taacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatggcggatgatcccctcgtcacggtggtacttaaatccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC