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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgataggctactgctataatttatccccaaaatatttgttactgcgtttttcattttgttttgttttttattctcatctgcaattgtttcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAATAGCCGTAATGTTCTTGAGGGCCCAACTCCAATCAGGTCATCTGATTCAC

Basic information

species Zea mays
transcript GRMZM2G123537_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123537_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g57390.1 (Oryza sativa), 3'ss of exon 2
attgataggctactgctataatttatccccaaaatatttgttactgcgtt-tttcattttgttttgttttttattctcatctgcaat-tgtttcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAATAGCCGTAATGTTCTTGAGGGCCCAACTCCAATCAGGTCATCTGATTCAC---
| || || || ||| ||| | |  ||| |||   |   | || | || |  |||  | |    ||||||||  || |||| || ||| | |||  ||| |||||||||||||| |||||||||  |   ||| ||||||||||||| ||||||||||| |||| | | ||  |||||| |||||| ||   | ||||||||    
actgttatgccactactacagtgcatcaccattct-cctattgcagcatagttttctgtcacattgtttttc-ttatcatttggaatgttttttcatgacagGAAAATATTAGTCGTCCTGCTTCTGCGGCCAGTCATCTTTCACGGTCTAATAGCCGGAATGCTTTCGACAGCCCAAATCCAATTAG---ACCTGATTCATCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654901|gb|BM499706.1|BM499706
EST:     ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG                         GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
EST: gi|87153122|gb|DY397911.1|DY397911
EST:     ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG                         GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
EST: gi|18654902|gb|BM499707.1|BM499707
EST:     ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG                         GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
EST: gi|18661927|gb|BM501655.1|BM501655
EST:     ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG                         GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtttttcattttgttttgttttttattctcatctgcaattgtttcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAATAGCCGTAATGTTCTTGAGGGCCCAACTCCAATCAGGTCATCTGATTCAC
                                        ttgtttc  CT-rich tract
     tttcattttgttttgt  TA-rich tract