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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacacacacatatatacgcttgccttttcatatataataataatcttcttctccgatatattataatctcttacggatgcatgcatggcaatggcaatggccggcattgcacggacgacatacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC

Basic information

species Zea mays
transcript GRMZM2G123140_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123140_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 3'ss of exon 3
gtaagacacacacatatatacgcttgccttttcatatataataataatcttcttctccgatatattataatctcttacggat-gcatgcatggcaatggcaatggccggcattgcacggacgacatacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC
||| |     ||  |  ||   |||  |||    |  |     ||   |  |   | ||||  |||    ||  |||    | ||    || |  ||    |     ||| | ||| | |   ||| |   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| 
gtacggttttcatctccatcttctt--cttcctcttcaatgccattgccagccgtttcgatcgattcgtctccattaaaccttgctgatattgtgatactgacaagtggcgt-gcatgcatc-catccatgcagGCTGTTCAAGGAGTGCCCGCATCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAACTGGGCCTCAAACCTCGCCAGGTCAAGTTCTGGTTCCAGAAT

upper sequence: GRMZM2G123140_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G01850.1 (Glycine max), 3'ss of exon 2
gtaagacacacacatatatacgcttgccttttcatatataataataatcttcttctccgatatattataatctcttacggatgcatgcatggcaatggcaatggccggcattgcacggacgacata----cgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC
                                    || |    |    ||  | |||  | |  || || ||   || |||  | |  |     ||    ||  |    || || |    |  ||        |||  |||||||||| ||||| ||||| || || |||||| ||||||| |||||||| ||  |||| || ||||| |||||||||||||||||||||||||||
------------------------------------tagatctctctcttttgtttcctttgtgata-aaactgaaactgatcaaggttttaatttgttgttgttcattgtttcatgtgtaatgtaacatttggcagTTTGTTCAAGGAATGCCCACACCCTGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGTCTTAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAAC

upper sequence: GRMZM2G123140_T04 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G34070.1 (Glycine max), 3'ss of exon 2
gtaagacacacacatatatacgcttgccttttcatatataataataatcttctt-ctccgatatattataatctcttacggatgcatgcatggcaatggcaatggccggcattgcacggacgacatacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC
                              |  ||||  | |  ||   || ||  |    ||  ||  ||  ||  || |     |   |  |  |  || |       | |   |  |     |     |||  |||||||||| || || |||||||| || |||||| | ||||| |||||||| ||  |||| || ||||| |||||||||||||||||||||||||||
-----------------------------ataaatattaattgttagcattattatttttgtaagttgaaaattcgaactgcaatcttttttcctttatcactaa-----actaaccttatatttttttggcagTTTGTTCAAGGAATGTCCACACCCGGATGATAAGCAGAGACTGAAACTGAGCCATGAATTGGGTCTTAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAAC

upper sequence: GRMZM2G123140_T04 (Zea mays), 3'ss of exon 2
lower sequence: EFJ37532 (Selaginella moellendorffii), 3'ss of exon 1
gtaagacacacacatatatacgcttgccttttcatatataataataatcttcttctccgatatattataatctcttacggatgcatgcatggcaatggcaatggccggcattgcacggacgacatacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC
                                                                                 | | |||| | | |  ||| ||    | | |   |   |  | | |   |||| ||||||||||||| || || || ||||| |||||||| | | ||||||||| |||||| || ||  | || || || |||||||||||||||||||| 
----------------------------------------------------------------------------gtaagtac-tgcaagccgagagca-tgatgagaacttatctttcttcgtgc---cagGTTGTTCAAGGAGTGTCCTCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAAT

upper sequence: GRMZM2G123140_T04 (Zea mays), 3'ss of exon 2
lower sequence: EFJ10492 (Selaginella moellendorffii), 3'ss of exon 2
gtaagacacacacatatatacgcttgccttttcatatataataataatcttcttctccgatatattataatctcttacgg-atgcatgcatggcaatggcaatggccggcattgcacggacgacatacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC
                                                            ||    ||    | |   |   | |  |  ||| | |    | ||  |   ||            | ||| |||  ||||||||||||||||||| ||||| ||||||||||||| | |||| |||| |||||| ||  |  | || || || |||||||| ||||||||||| 
-----------------------------------------------------------gtaagagattggttttggtgttgttctcgattggaagtcctcaaggtggattttttcttcgttttct-cgcgcagCTTGTTCAAGGAGTGCCCGCATCCGGATGACAAGCAGCGGCAGGAGCTCAGCCGGGAGCTCGGATTGGAGCCGCGGCAAGTCAAGTTTTGGTTCCAGAAT

upper sequence: GRMZM2G123140_T04 (Zea mays), 3'ss of exon 2
lower sequence: EFJ34024 (Selaginella moellendorffii), 3'ss of exon 1
gtaagacacacacatatatacgcttgccttttcatatataataataatcttcttctccgatatattataatctcttacggatgcatgcatggcaatggcaatggccggcattgcacggacgacatacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC
                                                                                 | | | || | | |  ||| ||    | | |   |   |  | | |   |||| ||||||||||||| || || || ||||| |||||||| | | ||||||||| |||||| || ||  | || || || |||||||||||||||||||| 
----------------------------------------------------------------------------gtaagtac-tacaagccgagagca-tgatgagaacttatctttcttcgtgc---cagGTTGTTCAAGGAGTGTCCTCATCCCGACGATAAGCAGCGCCAGGAGCTGAGCCGGGAGCTAGGACTGGAGCCTCGGCAAGTCAAGTTCTGGTTCCAGAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76280818|gb|DV020386.1|DV020386
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71444077|gb|DR825127.1|DR825127
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|149087104|gb|EE176643.2|EE176643
EST:     AAGAAACAGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|50324011|gb|CO519137.1|CO519137
EST:     ACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: ACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76294065|gb|DV033633.1|DV033633
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|50335383|gb|CO530509.1|CO530509
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|93011830|gb|EB637350.1|EB637350
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71432528|gb|DR813578.1|DR813578
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71764164|gb|DR962101.1|DR962101
EST:     CCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: CCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76284797|gb|DV024365.1|DV024365
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76929427|gb|DV172012.1|DV172012
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|86469088|gb|DY235458.1|DY235458
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71315704|gb|DR794479.1|DR794479
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78075704|gb|DV504138.1|DV504138
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|148938577|gb|EC882901.2|EC882901
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCAGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|148953385|gb|EE152879.2|EE152879
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|91055340|gb|EB165758.1|EB165758
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|50330271|gb|CO525397.1|CO525397
EST:     GGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: GGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78103736|gb|DV522164.1|DV522164
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76021621|gb|DT948791.1|DT948791
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78103849|gb|DV522277.1|DV522277
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71756854|gb|DR954791.1|DR954791
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71329726|gb|DR801584.1|DR801584
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78084627|gb|DV513020.1|DV513020
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATAGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78083048|gb|DV511441.1|DV511441
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71446315|gb|DR827365.1|DR827365
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78104189|gb|DV522607.1|DV522607
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGCAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|50322570|gb|CO517696.1|CO517696
EST:     ACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: ACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71761861|gb|DR959798.1|DR959798
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76291558|gb|DV031126.1|DV031126
EST:     AACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|50336561|gb|CO531687.1|CO531687
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|149071579|gb|EE159971.2|EE159971
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78124125|gb|DV542509.1|DV542509
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76909798|gb|DV163540.1|DV163540
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78114319|gb|DV532708.1|DV532708
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76922345|gb|DV168961.1|DV168961
EST:     CACGGCACACCAGATCCAGCAGATGGAAGC                         GCTG-TCNAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGA
genomic: CACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTC-AAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGA
EST: gi|78076344|gb|DV504778.1|DV504778
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71773680|gb|DR971577.1|DR971577
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|50323712|gb|CO518838.1|CO518838
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|91872049|gb|EB402006.1|EB402006
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|89246976|gb|DY618762.1|DY618762
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78116122|gb|DV534510.1|DV534510
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78121680|gb|DV540064.1|DV540064
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76283507|gb|DV023075.1|DV023075
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78113181|gb|DV531575.1|DV531575
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|101383246|gb|EB813679.1|EB813679
EST:     AGAAACGGGTACCACCGCCACACGGCACACCAGATCCAGCAGAGGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AGAAAC-GGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|76012967|gb|DT940137.1|DT940137
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71426041|gb|DR807091.1|DR807091
EST:     GGCACCCCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAC
genomic: GGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|149108465|gb|EE189665.2|EE189665
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|148974605|gb|EE025399.2|EE025399
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71763213|gb|DR961150.1|DR961150
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|101385658|gb|EB814877.1|EB814877
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|148974497|gb|EE025280.2|EE025280
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|78112023|gb|DV530419.1|DV530419
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71430905|gb|DR811955.1|DR811955
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|50333731|gb|CO528857.1|CO528857
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71328778|gb|DR801073.1|DR801073
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|91054309|gb|EB164727.1|EB164727
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71758544|gb|DR956481.1|DR956481
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71769102|gb|DR967039.1|DR967039
EST:     AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: AAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|38687296|gb|CK144327.1|CK144327
EST:     CACCAGATCCAGCAGATGGAAGC                         GCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: CACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
EST: gi|71317347|gb|DR795368.1|DR795368
EST:     ATCCAGCAGATGGAAGC                         GCTGTTCAGGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG
genomic: ATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 44 (downstream exon)
Score: 154

CGGCGGATGCCGCCGGACAGCAGCAGCAGCTGGCCACCGCCAACGGCAAGAAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC


Block sizes: 42 (upstream exon), 34 (downstream exon)
Score: 7

CGGCGGATGCCGCCGGACAGCAGCAGCAGCTGGCCACCGCCAACGGCAAGAAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC


Block sizes: 39 (upstream exon), 32 (downstream exon)
Score: 3

CGGCGGATGCCGCCGGACAGCAGCAGCAGCTGGCCACCGCCAACGGCAAGAAGAAACGGTACCACCGCCACACGGCACACCAGATCCAGCAGATGGAAGCgtaagacaca ... atacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagacacacacatatatacgcttgccttttcatatataataataatcttcttctccgatatattataatctcttacggatgcatgcatggcaatggcaatggccggcattgcacggacgacatacgcacagGCTGTTCAAGGAGTGCCCGCACCCGGACGACAAGCAGCGGCTGAAGCTGAGCCAGGAGCTGGGGCTCAAACCCCGCCAGGTCAAGTTCTGGTTCCAGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT