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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccggttcccttccttccttgcttgcttttccttctctctctctggctctctgcctggcgcttactagtccttcactccttccactgaatttatttattgtatattttgttcgactgcgcgcatgcagATTGCCTGCTACCTGCACCACAGATACAAGTCGGCCAAGTCTAGCACGTACAAGGCGGACG

Basic information

species Zea mays
transcript GRMZM2G123029_T05
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32843979|gb|CD983660.1|CD983660
EST:     ACACCGGCAGCTCCAACCTCTGGGTCCCCTCCTCCAGATGCTACTTCTCG                         ATAGCCTGCTACCTCCACCACAGATACAAGTCGGCCAAGTCTAGCACGT
genomic: ACACCGGCAGCTCCAACCTCTGGGTCCCCTCCTCCAGATGCTACTTCTCGgtccggttcc ... gcgcatgcagATTGCCTGCTACCTGCACCACAGATACAAGTCGGCCAAGTCTAGCACGT
EST: gi|8367962|gb|BE050907.1|BE050907
EST:     ACACCGGCAGCTCCAACCTCTGGGTCCCCTCCTCCAGATGCTACTTCTCG                         ATTGCCTGCTACCTGCACCACAGATACAAGTCGGCCAAGTCTAGCACGTAC
genomic: ACACCGGCAGCTCCAACCTCTGGGTCCCCTCCTCCAGATGCTACTTCTCGgtccggttcc ... gcgcatgcagATTGCCTGCTACCTGCACCACAGATACAAGTCGGCCAAGTCTAGCACGTAC
EST: gi|32844916|gb|CD984597.1|CD984597
EST:     ACACCGGCAGCTCCAACCTCTGGGTCCCCTCCTCCAGATGCTACTTCTCG                         ATAGCCTGCTACCTCCACCACAGATACAAGTCGGCCAAGTCTAGCACGT
genomic: ACACCGGCAGCTCCAACCTCTGGGTCCCCTCCTCCAGATGCTACTTCTCGgtccggttcc ... gcgcatgcagATTGCCTGCTACCTGCACCACAGATACAAGTCGGCCAAGTCTAGCACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactccttccactgaatttatttattgtatattttgttcgactgcgcgcatgcagATTGCCTGCTACCTGCACCACAGATACAAGTCGGCCAAGTCTAGCACGTACAAGGCGGACG
          actgaatttatttatt  TA-rich tract