Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataccaggcaccaatcattatctttgaatacttatgtatagtggttcctgaactaaaactactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATCGCACGCTATG

Basic information

species Zea mays
transcript GRMZM2G122871_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122871_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g37440.1 (Oryza sativa), 3'ss of exon 3
gtatacca--ggcaccaatcattatctttgaatacttatgta---tagtggttcctgaactaaaactactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATCGCACGCTATG
|||| | |  |  |   || ||||  ||||   | | | ||     || |   |  | |||||   | || |  || |||||||||||||||||||||| ||  ||||||||||||| ||||||||||| |||||||
gtatgcgaatgtaatttataattagatttgtccaataaagtgaatcagggagacagggactaatcattctttgcagATTCCTGTTCTGGAGACTCCTGAAGGTGCTGTTTTTGAGAGCAATGCTATCGCGCGCTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32911393|gb|CF016205.1|CF016205
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCCGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211066069|gb|FK950657.1|FK950657
EST:     TGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGTGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGKAATGCTAT
genomic: TGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTG-GGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTAT
EST: gi|20301023|gb|BQ163966.1|BQ163966
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211066063|gb|FK950651.1|FK950651
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         TTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211439479|gb|FK950632.1|FK950632
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211426487|gb|FK950553.1|FK950553
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTKAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429076|gb|FK950568.1|FK950568
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211426488|gb|FK950554.1|FK950554
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211197063|gb|FK950520.1|FK950520
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211436884|gb|FK950619.1|FK950619
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211436885|gb|FK950620.1|FK950620
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTT-GGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211436889|gb|FK950624.1|FK950624
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211434295|gb|FK950612.1|FK950612
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|32844294|gb|CD983975.1|CD983975
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429087|gb|FK950579.1|FK950579
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211436886|gb|FK950621.1|FK950621
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211431686|gb|FK950589.1|FK950589
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTT-GGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068803|gb|FK950661.1|FK950661
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211431688|gb|FK950591.1|FK950591
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068812|gb|FK950670.1|FK950670
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211421271|gb|FK950524.1|FK950524
EST:     GTATCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGNTTTTGAGAGCAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211439488|gb|FK950641.1|FK950641
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211436883|gb|FK950618.1|FK950618
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211431689|gb|FK950592.1|FK950592
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068811|gb|FK950669.1|FK950669
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211071543|gb|FK950680.1|FK950680
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGAAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTT-GAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429089|gb|FK950581.1|FK950581
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTG
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTG
EST: gi|4628217|gb|AI619091.1|AI619091
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211434287|gb|FK950604.1|FK950604
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTT-GGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|32845728|gb|CD985409.1|CD985409
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211421280|gb|FK950533.1|FK950533
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTT-GGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068800|gb|FK950658.1|FK950658
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211421284|gb|FK950537.1|FK950537
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068808|gb|FK950666.1|FK950666
EST:     TGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTCTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCKAT
genomic: TGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCT-TGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTAT
EST: gi|211066059|gb|FK950647.1|FK950647
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211071538|gb|FK950675.1|FK950675
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211066058|gb|FK950646.1|FK950646
EST:     TGTCTCCAACAAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: -GTCTCCAACAA-GACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211197057|gb|FK950514.1|FK950514
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211066066|gb|FK950654.1|FK950654
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211434290|gb|FK950607.1|FK950607
EST:     GTGTCTCCAACAANACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211071546|gb|FK950683.1|FK950683
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211197058|gb|FK950515.1|FK950515
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211421281|gb|FK950534.1|FK950534
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068806|gb|FK950664.1|FK950664
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|32914735|gb|CF019547.1|CF019547
EST:     GTGTCTCCAACAAGACCCCTGGGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211421273|gb|FK950526.1|FK950526
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211436879|gb|FK950614.1|FK950614
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211071541|gb|FK950678.1|FK950678
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211431682|gb|FK950585.1|FK950585
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429085|gb|FK950577.1|FK950577
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCTTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211426492|gb|FK950558.1|FK950558
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTYTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211066056|gb|FK950644.1|FK950644
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGCCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429086|gb|FK950578.1|FK950578
EST:     GTATCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211421279|gb|FK950532.1|FK950532
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|6020997|gb|AW065925.1|AW065925
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429084|gb|FK950576.1|FK950576
EST:     GTGTCTCCAN-AAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211431692|gb|FK950595.1|FK950595
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGG-AAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211434286|gb|FK950603.1|FK950603
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTT-GGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068813|gb|FK950671.1|FK950671
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429082|gb|FK950574.1|FK950574
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211439487|gb|FK950640.1|FK950640
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211068814|gb|FK950672.1|FK950672
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGGCCCTGTTTTTGAGAGTAATGCTAT
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGG-CCCTGTTTTTGAGAGTAATGCTAT
EST: gi|211068807|gb|FK950665.1|FK950665
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211421283|gb|FK950536.1|FK950536
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211431683|gb|FK950586.1|FK950586
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211066068|gb|FK950656.1|FK950656
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
EST: gi|211429077|gb|FK950569.1|FK950569
EST:     GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAG                         GTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC
genomic: GTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 4429

TGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGGGTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATCGCACGCTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2498

TGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGGGTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATCGCACGCTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2516

TGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGGGTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATCGCACGCTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2146

TGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGGGTGTCTCCAACAAGACCCCTGAGTTTCTTAAGATGAACCCCCTTGGGAAGgtataccagg ... tactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATCGCACGCTATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattatctttgaatacttatgtatagtggttcctgaactaaaactactatttagGTTCCTGTTCTGGAGACTCCTGATGGCCCTGTTTTTGAGAGTAATGCTATCGCACGCTATG
                                    aactaaa  putative branch site (score: 2146)
                                       taaaactactattta  TA-rich tract