1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttctctgtttctgtttctggaaaccaataatgttaacacatttgaatatcctaatgatacaatgtattcttaattattgaaactcaataccttttacagCACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAACATATTGCTGCCGTGCCCTTATGTACTTTGGAGGCCAAAAGGTATGAACC
species | Zea mays |
transcript | GRMZM2G122198_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATG CACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAACEST: gi|211069438|gb|FK971270.1|FK971270
genomic: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATGgtaaacgtta ... ccttttacagCACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAAC
EST: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATG CACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAACEST: gi|89248552|gb|DY620338.1|DY620338
genomic: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATGgtaaacgtta ... ccttttacagCACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAAC
EST: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATG CACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAACEST: gi|211069439|gb|FK971271.1|FK971271
genomic: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATGgtaaacgtta ... ccttttacagCACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAAC
EST: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATG CACGTCCAATATCGACTGCAGCAAGGATGGCATGTTTTGCTAAGAAGCAAC
genomic: GCAGATCTCCACAAGGCAGTCTCTTCGGTTTGCTTTACCTTCGAACAATGgtaaacgtta ... ccttttacagCACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAAC
aatatcctaatgatacaatgtattcttaattattgaaactcaataccttttacagCACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAACATATTGCTGCCGTGCCCTTATGTACTTTGGAGGCCAAAAGGTATGAACC
tacctttt CT-rich tract
taatgatacaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctctgtttctgtttctggaaaccaataatgttaacacatttgaatatcctaatgatacaatgtattcttaattattgaaactcaataccttttacagCACGTCCAATATCGACTGCAGCAAGAATGACATGTTTTGCTAAGAAGCAACATATTGCTGCCGTGCCCTTATGTACTTTGGAGGCCAAAAGGTATGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - tctgttt
- - - tgtttct
- - - - - - - - - - -aaaccaa
- - - - - - - - - - - - - - - - - -aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactcaa