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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctctctgttgcagtatttctctggcatttgctctagagtgaaacaattgtactttatctgtttatcatatatattgtgatttcgttctcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACCATACCAGGAAGTCCTGGTCTTTGAG

Basic information

species Zea mays
transcript GRMZM2G120578_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120578_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g15550.1 (Oryza sativa), 3'ss of exon 3
ttgctctctgttgcagtatttctctggcat-ttgctctagagtgaaacaattgtactttatctgtttatcatatatattgtgatttcgttctcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACCATACCAGGAAGTCCTGGTCTTTGAG
 |  | | |  |    | ||    || ||| |  || |    |  ||       | |  |  |  |  ||| |  | |  ||||||  || |  || | |||||||||||||||  ||||||| ||||| || ||||| |||||||| ||||||||||| |||||  | || ||||||
cttttttttcatctgttgttctgttgccatctcactgttagatataatccaacaattccaattaatcctcacagctctcatgattt-atttttgtacacagGAGAGGCCCATTCACTGAAAGTTGAGAAGATCTTGTATCAGGGGAAGTCACCATACCAAGAAGTTTTAGTTTTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079124|gb|EE168043.2|EE168043
EST:     GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG                         GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGGAAAATC
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGG-AAA-TC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaattgtactttatctgtttatcatatatattgtgatttcgttctcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACCATACCAGGAAGTCCTGGTCTTTGAG
                                     tttcgttctc  CT-rich tract
          tttatctgtttatcat  TA-rich tract