1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaggtttcctcgtgcaatttcagtagagaattgggcatggtgcttagatgctaataggtgtttctgagcgaaggttttcctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGTTCTGGTTACTCCCCTTGGAGCACTCAGCATAATTGTTAG
species | Zea mays |
transcript | GRMZM2G120175_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTA TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGEST: gi|149085221|gb|EE174729.2|EE174729
genomic: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTAgtaaggtttc ... cctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
EST: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTA TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGEST: gi|148943741|gb|EC888811.2|EC888811
genomic: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTAgtaaggtttc ... cctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
EST: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTA TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGEST: gi|71423545|gb|DR806069.1|DR806069
genomic: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTAgtaaggtttc ... cctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
EST: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTA TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGEST: gi|76287458|gb|DV027026.1|DV027026
genomic: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTAgtaaggtttc ... cctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
EST: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTA TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGEST: gi|76281094|gb|DV020662.1|DV020662
genomic: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTAgtaaggtttc ... cctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
EST: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTA TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGEST: gi|148963641|gb|EE014691.2|EE014691
genomic: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTAgtaaggtttc ... cctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
EST: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTA TGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
genomic: CGGGTACTCATACCTCATGGAGCCCCTGTGGTGGGTTGGCATGATCATTAgtaaggtttc ... cctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTG
ggcatggtgcttagatgctaataggtgtttctgagcgaaggttttcctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGTTCTGGTTACTCCCCTTGGAGCACTCAGCATAATTGTTAG
tgctaat putative branch site (score: 102)
ttttcctctttc putative PPT
taata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtttcctcgtgcaatttcagtagagaattgggcatggtgcttagatgctaataggtgtttctgagcgaaggttttcctctttcagTGATTGTAGGTGAGATTGCCAATTTCGTGGCATATGCTTTCGCCCCCGCTGTTCTGGTTACTCCCCTTGGAGCACTCAGCATAATTGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA