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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG

Basic information

species Zea mays
transcript GRMZM2G119357_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g32620.1 (Oryza sativa), 3'ss of exon 2
-------------------gtacggagctcctcaatcctttcattgttgactttttc----ttctctg---tgcatgcgttttga--gcctgcttgtgataatttgggtgtgtgtatt--tttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
                   || |    | | |    |  | || |||||  ||| |     |||  ||   ||   |  | ||||  ||    | ||      ||| || |   | ||  ||| ||| ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||
gtatgcttgaatgctgattgttcatttcccgttccccagtgcaatgttggatttgttcaatttccatgggatgttagaatgttgattgctgattcgtctctgcttgtgttttctttttcgtttttctgaagATACTGCAAGTGTGAGATGCCATACAACCCGGATGATCTCATGGTGCAGTGCGATGACTGCAAGGACTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G35680.2 (Glycine max), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttt-tgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
      || |  |   |  |||  ||  |||  |  | || |  |||  ||   |  || |  |  || || | |||||| |  || |  | |  | | |||||||||||| || |||||||| || ||||| |||||||||||||||||||| || |  |||||||| ||
---gtaagtttatttctgttttttttagtgagataatgttgtaagtgtttgaaatggtgggttttgttttgttgatttggttcggttt--tgtggtttgaagGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G34740.3 (Glycine max), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttc---ttctctgtgcat---gcgttt-------tgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG-------------------------------
         |  | | | || |  ||  |||  |  |    || | ||||  |   | ||||       || |  |  || || | |||| | | || || || |  | | |||||||||||| || |||||||| || ||||| |||||||||||||||||||| || |  |||||||| ||                               
--gtaagtttttttatttctgtttttactgagataatggtgttgtttgtgttttaagtgtttgaaatggtgggttttgttttgttgatttag-tttg-gttttgtgttttgaagGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTAAAACCAGTATATTCTGCTTTTTTTTGTT

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G20180.1 (Glycine max), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttcttct----ctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
     ||| |  |  ||  |     ||  || |||   || |    |||     || |||      | ||| |  | |  |   | ||||  || |  | | |||||||||||||||||||||||| || ||||||||||| |||||||| || || ||||  |||||||| ||
-----gaggttattgattgtggggatggggattttgggttttggaactgatggggcttttctttttttcttttcttgaactttttttgtggtttgtgttttgaagGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G34740.1 (Glycine max), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttc---ttctctgtgcat---gcgttt-------tgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
         |  | | | || |  ||  |||  |  |    || | ||||  |   | ||||       || |  |  || || | |||| | | || || || |  | | |||||||||||| || |||||||| || ||||| |||||||||||||||||||| || |  |||||||| ||
--gtaagtttttttatttctgtttttactgagataatggtgttgtttgtgttttaagtgtttgaaatggtgggttttgttttgttgatttag-tttg-gttttgtgttttgaagGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G34850.1 (Glycine max), 3'ss of exon 1
gtacggagctcctcaatcct---ttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
| | ||   |  |   |        |   |  |    ||| || | | |   || |    | |   |   | |     ||     | ||  || |  | | |||||||||||||||||||||||| || ||||||||||| |||||||| || || ||||  |||||||| ||
ggaggggtttttttggtttcaggcccgagggggttccttttttttttttttttggggggggggggggggcgggggggcttt----tttggtttgtgttttgaagGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G22140.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
||| | || |    | |  |   ||     |||    |||||   | | ||   |||        || | ||   ||| | || |||  ||   ||| |||||| ||||||||||| ||||| ||||| || || || |||||||||||||| ||||  ||||| |||||
gtaagtagataaatagtaatcagatcag-aactacgccttcttattacctggaatttccatg-attttttatctgttgtgggt-tgttgttggttctgaagGTACTGCAAATGTGAAATGCCTTACAATCCAGACGATCTCATGGTGCAGTGTGAAGGCTGCAAAGACTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv10s0116g00160.t01 (Vitis vinifera), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
     | |    | | |  |||   || ||  ||  |  |   ||       ||  || |  | | || | | ||       | || |||||    | ||||||||||||||| |||||||| || ||||| ||||| || ||||| |||||||| |  |||||||||||
-----gtgagtttgagttgttt---tgctggattgatgattgatgattgaatgtactg-gtattcgtgggctgatgaatacttttgaattttgtattgaagGTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv12s0059g01180.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcat---gcgttttgagcctgcttgtgataat--ttgggtgtgtgta--tttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
                                                  | |     ||    |||  ||  | |  | | |  ||    |   ||  |   | |||||      ||      | ||  |||  ||| | |   ||||  | ||||||||||| || || |||||||| || || ||||| ||||| ||||||||||||||||  |||||||||||
gtgagtccgagttccattaaagattaaactgcatttagctcatagaagcagaaaattactttcaaattgttaaactaataattacttggattggatgttttgagggtttttgattggcactgactgatgcttgaatgtttttgggttttgatttaaagGTATTGTAAGTGCGAGATGCCTTATAATCCGGACGACCTTATGGTGCAGTGCGAAGGATGCAAGGACTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S384_37V6.1 (Physcomitrella patens), 3'ss of exon 2
-----------------------------------------------------------gtacggagctcctcaatcctt--tcattgttgactttttctt----ctctgtgcatgcgttttgagcctgcttg--tgataatttgggtgtgtgtatttttctctaa--------------agGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
                                                           ||  ||   | | ||   | |  |    ||||  | ||   |      | |||  |  |  ||  |  ||      | |  | || |  |  |   ||  |  ||                ||||||||||| |||||||||||||||||||| ||  || | ||| || | ||| |   |||||| |||||
gtaaggctccgcattgcatgaatgagtcgtttaagatgggcataacctatgaagtttgcgtgtggtaatgcgcagcgcatgttaggcgttgggtcttctgtgaggtgcagtgagtcagggttaggtttgtgcagttaacgactttgtcgatttcgttgataacttggaatggggtgtttcagGTATTGCAAGTGTGAGATGCCATACAACCCTGACCACGTGATGCTGGAATGCAACAGTTGCAAAGACTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ05369 (Selaginella moellendorffii), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
                   |   ||||   |   | ||   |  |    |   | ||  ||   ||| |     ||||||| || | |         | ||||| ||||| || |||||||| |||||||||||||| || ||||||||||| || |  ||||| |||||
------------------gtaagattgacaaagctctcactttggattctctatcttatgctctctttt-----tttgggtttgcggaa--------acagGTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ16306 (Selaginella moellendorffii), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
||   |   |  || | | | || ||  |  |||  |||  | ||||   |   ||          | |  |  | |      | |  || ||   | |||||||||||||||||||||||||||||| ||||| ||  | ||||| ||||||||  | |||||||| ||
gtctcgttgtgttcgaacttctctttcctctcttggtctcgt-tgtgatcgaacttctctttcttctcttgtgttcttaccaagcgctttattacgtgaagGTATTGCAAATGTGAGATGCCATACAATCCGGACGATTTGATGGTTCAGTGCGAGTCCTGCAAGGATTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ17782 (Selaginella moellendorffii), 3'ss of exon 2
---------------------------------------------------------------------------gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtg--ataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
                                                                              |   |   |    |  | | || |      |  | |||||  ||  | ||   |   | | ||| |    |  | |      | |  || ||   | |||||||||||| ||||||||||||||||| ||||| ||  | ||||| ||||||||  | |||||||| ||
gtaagtgctctctctctccctctgtctctctggcgtctcgttgactagttgtgttcttatcaagcttctctttcttctcttggtctcgttgtgttcttatcgaacttctcctgttctcgttgtgttcgaacttctctttcttctcttgtgttcttaccaagcgctttattacgtgaagGTATTGCAAGTGTGAGATGCCATACAATCCGGACGATTTGATGGTTCAGTGCGAGTCCTGCAAGGATTG

upper sequence: GRMZM2G119357_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ26805 (Selaginella moellendorffii), 3'ss of exon 2
gtacggagctcctcaatcctttcattgttgactttttcttctctgtgcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
                   |   ||||   |   | ||   |  |    |   | ||  ||   ||| |     ||||||| ||             | ||||| ||||| || |||||||| |||||||||||||| || ||||||||||| || |  ||||| |||||
------------------gtaagattgacaaagctctcactttggattctctatcttatgctctctttt-----tttgggtttgaa-----------acagGTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811207|gb|BQ295685.1|BQ295685
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211466206|gb|FL385418.1|FL385418
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTAT-GCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|29947220|gb|CB816542.1|CB816542
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|91878616|gb|EB408573.1|EB408573
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCTTGTCAGT                         GTATTGCAAATGTGAGATGCC
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCC
EST: gi|26559400|gb|CA831635.1|CA831635
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGC
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGC
EST: gi|87157797|gb|DY402586.1|DY402586
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211461041|gb|FL374799.1|FL374799
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCC-TGAACGCGTGGCAGT                         GTATTGCAAATGTGAGATG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATG
EST: gi|87156816|gb|DY401605.1|DY401605
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|89762190|gb|DY689899.1|DY689899
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|89757789|gb|DY687239.1|DY687239
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCCTACACCCCGG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGG
EST: gi|22819298|gb|BU499388.1|BU499388
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|22819350|gb|BU499440.1|BU499440
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211482256|gb|FL401501.1|FL401501
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211068884|gb|FL409568.1|FL409568
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCART                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGT
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGT
EST: gi|211489994|gb|FL137477.1|FL137477
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGC
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGC
EST: gi|211317910|gb|FL427640.1|FL427640
EST:     TTTGAGTACAAGGCGGGCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGGCATACAACCCGGATGACCTCATGGGTGCAAT
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGG-TGCAGT
EST: gi|211411404|gb|FL425499.1|FL425499
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211421418|gb|FL412842.1|FL412842
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211533016|gb|FL385906.1|FL385906
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATYGCAAATGTGAGATGCCATACAACCCGGATGAC
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGAC
EST: gi|31406109|gb|CD484841.1|CD484841
EST:     TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGT                         GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 109

AGAACTACACCAAGCTTGATAATGTCGGGCCTGAGGACTTCTTCTCCCGATTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 77

AGAACTACACCAAGCTTGATAATGTCGGGCCTGAGGACTTCTTCTCCCGATTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 90

AGAACTACACCAAGCTTGATAATGTCGGGCCTGAGGACTTCTTCTCCCGATTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 70

AGAACTACACCAAGCTTGATAATGTCGGGCCTGAGGACTTCTTCTCCCGATTTGAGTACAAGGCGGCCACCGGTTCGTTCACCCCTGACCGCGTGGCAGTgtacggagct ... ttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgcgttttgagcctgcttgtgataatttgggtgtgtgtatttttctctaaagGTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTG
                                        tatttttctct  CT-rich tract
                                        tatttttctctaaa  TA-rich tract