1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatgatggcacacaatattgttcagttgctgacgccattcgttctttgatatgatgttgacatattttggtgtttgttaatgctcctgtcatacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGGTACCTTGAGGATGTGATTGCCCACAAGCAGGCCATCCCGTTCC
species | Zea mays |
transcript | GRMZM2G119169_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|211378377|gb|FL000672.1|FL000672
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|211381028|gb|FL000688.1|FL000688
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|50335900|gb|CO531026.1|CO531026
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|30704742|gb|CD058589.1|CD058589
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|211381023|gb|FL000683.1|FL000683
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|60356912|gb|DN223885.1|DN223885
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|29167874|gb|CB411134.1|CB411134
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCEST: gi|67011073|gb|CO439822.1|CO439822
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
EST: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG AACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
genomic: CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAGgtgagagatt ... atacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCC
ttgatatgatgttgacatattttggtgtttgttaatgctcctgtcatacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGGTACCTTGAGGATGTGATTGCCCACAAGCAGGCCATCCCGTTCC
tgttaat putative branch site (score: 182)
acatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatggcacacaatattgttcagttgctgacgccattcgttctttgatatgatgttgacatattttggtgtttgttaatgctcctgtcatacttgtagAACACCCGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGGTACCTTGAGGATGTGATTGCCCACAAGCAGGCCATCCCGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
tatgatg
- - - -gcacaca
- - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - -gccattc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt