1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattctcttctgcttctgctcgaggctcctcctcctgctgctgttcccagttcaccacgagcgtaacgtggatggtttgtccttttgttctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCAA
species | Zea mays |
transcript | GRMZM2G118586_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|28188265|gb|CB179875.1|CB179875
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: GTACCATCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|32925177|gb|CF029989.1|CF029989
genomic: GTACC-TCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|21432169|gb|BQ547659.1|BQ547659
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|60346160|gb|DN213133.1|DN213133
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|211438327|gb|FL007592.1|FL007592
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|32925995|gb|CF030807.1|CF030807
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|211435743|gb|FL007591.1|FL007591
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCEST: gi|37376615|gb|CF624854.1|CF624854
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
EST: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAG AATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
genomic: TGTACCTCACCTGCATCCGGAACACTCTGGAGGCGGCGATGTGCCTCCAGgtattctctt ... ctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTC
tcccagttcaccacgagcgtaacgtggatggtttgtccttttgttctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCAA
gcgtaac putative branch site (score: 140)
tttgtccttttgttct putative PPT
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattctcttctgcttctgctcgaggctcctcctcctgctgctgttcccagttcaccacgagcgtaacgtggatggtttgtccttttgttctggtaccagAATTTCCCTTGCCAAGAAGTCGAGAGGCACAACAAACCGGAGGTGGAGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA