1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtagtaatccccagatctcctccatatctgtaattatatatccaatagtatcatctcaaattgtgactcgtgcgcgtattttttggactgaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCTTTGAACAGATCCCAGCCGCCGCAGTGGATAGCAGCGACAACATCATCC
species | Zea mays |
transcript | GRMZM2G118063_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAATAATGGCATCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGGTGATTATTCCGEST: gi|89763730|gb|DY690808.1|DY690808
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCC--------A----Ggtgattattc ...
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCEST: gi|78116714|gb|DV535101.1|DV535101
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCEST: gi|50323259|gb|CO518385.1|CO518385
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GTGATTATTCCGGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCEST: gi|78087580|gb|DV515973.1|DV515973
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagG--------C----TGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGGTGATTATTCCGEST: gi|148934302|gb|EC878328.2|EC878328
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCC--------A----Ggtgattattc ...
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCEST: gi|149100689|gb|EE186778.2|EE186778
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCEST: gi|148953688|gb|EC899049.2|EC899049
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGGTGATTATTCCGEST: gi|50335761|gb|CO530887.1|CO530887
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCC--------A----Ggtgattattc ...
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCEST: gi|149015319|gb|EE045135.2|EE045135
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGGTGATTATTCCGEST: gi|71299781|gb|DR785898.1|DR785898
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCC--------A----Ggtgattattc ...
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCEST: gi|149102070|gb|EE287534.2|EE287534
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCEST: gi|88746864|gb|DY531005.1|DY531005
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
EST: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAG GCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
genomic: GGAATAATGGCGTCGCGTTCGGGTCCTCGTCAGCGCTATCTTTAAGCCAGgtgattattc ... gaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTC
atagtatcatctcaaattgtgactcgtgcgcgtattttttggactgaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCTTTGAACAGATCCCAGCCGCCGCAGTGGATAGCAGCGACAACATCATCC
tatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagtaatccccagatctcctccatatctgtaattatatatccaatagtatcatctcaaattgtgactcgtgcgcgtattttttggactgaaatcgcagGCTGACTTCCTAGACAGCCATCATCTGCAGCAAGCGTTCGAGCAGCAACTCTTTGAACAGATCCCAGCCGCCGCAGTGGATAGCAGCGACAACATCATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA