1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatggtattctgtattccgcatcctcattgttttagtcagcaatcagcatcatggtcatcttatctgaaagcatgcccatttggctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGATTCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGAAGAAGAGATTAT
species | Zea mays |
transcript | GRMZM2G118014_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCG ATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGAEST: gi|60349387|gb|DN216360.1|DN216360
genomic: GGAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
EST: GAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCG ATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGAEST: gi|211168469|gb|FK981061.1|FK981061
genomic: GAGCAGAGAAACAAAAGGAGGACAGGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
EST: GGCACAACTGAGGATGATAGGCG AACTAAAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
genomic: GGCAAAACTGAAGATGATAGGCGgtatggtatt ... gctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGA
agcaatcagcatcatggtcatcttatctgaaagcatgcccatttggctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGATTCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGAAGAAGAGATTAT
ctctttt CT-rich tract
atcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtattctgtattccgcatcctcattgttttagtcagcaatcagcatcatggtcatcttatctgaaagcatgcccatttggctcttttagATCTAGAGAGCAGAGCAAGGATCGAAACGGCCCGCCGTCCAGGGATAGAGATTCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGAAGAAGAGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA