Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG

Basic information

species Zea mays
transcript GRMZM2G118003_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g49600.2 (Oryza sativa), 3'ss of exon 2
----gtacttaactatgcgaagcaaataaaccg-atctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
    |  || || ||||||   | ||        ||      | ||       |   |    |  ||  |     |     |   |||||   |||||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
aaatgctctaaaatatgcgtgtccaaggtcttacattacatgtaagtgtttccattctccattatctaaaaaaaaagtgtatccattctggaacaggaagATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g49600.3 (Oryza sativa), 3'ss of exon 2
--------gtacttaactatgcgaagcaaataaaccg-atctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
        |  || || ||||||   | ||        ||      | ||       |   |    |  ||  |     |     |   |||||   |||||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
ctgtaaatgctctaaaatatgcgtgtccaaggtcttacattacatgtaagtgtttccattctccattatctaaaaaaaaagtgtatccattctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 2
-----gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactc-------ttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
       | || | |||     | ||||    |  | ||   || ||   |   |    |  ||   || |  |   ||         | |||  |    ||||||||  | |||||||||   ||  |||| |||||||||||||||||||||||||| |||||||| || || ||  
gaagtacatttgattatatt--gtaaatgt-tcattatgtattgtgattgagttgtccctcttgttgttcttctctgctggaataaactctgtaatttgacagGAAGATATAGATCTCATGGCCAGCCTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G11310.1 (Glycine max), 3'ss of exon 2
---------gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
             || | ||||    |  | | ||  |  |               |   |  | |  |  |    | |||    | | |  |    ||||||||  | |||||||||   || ||||| |||||||||||||||||||||||||| |||||||| || || ||  
tatattgtaaatgttcattatgtattgtgattgaattgtacctcttgttcttctctgctggaataaaactatgtgagctaaagtatgtttaatttgacagGAAGATATAGATCTCATGGCCAGCTTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
-------------gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgctt-cagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
              |  |||| |||   |   ||        || |  ||   |   |||     ||||| |   | || |  ||||  |  | | || |  ||||||||  | || || ||||| ||| | || ||||| || ||||| ||||||||||||||||||||||| ||||| |
gtttttaagtcttttttttaattatat-atataatctgtttcatttttgccttgtttcaaat--atttgaagaaataattgaaaactact--gatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211195344|gb|FK979452.1|FK979452
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32848755|gb|CD988436.1|CD988436
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211322178|gb|FK979475.1|FK979475
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928641|gb|CF033453.1|CF033453
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|6826935|gb|AW330578.1|AW330578
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|26558653|gb|CA830888.1|CA830888
EST:     TACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: TACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195347|gb|FK979455.1|FK979455
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|109179241|gb|EC379886.1|EC379886
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192948|gb|FK979444.1|FK979444
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192942|gb|FK979438.1|FK979438
EST:     CAGGGAATCAAAATGGAGACGTTGCAATGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190542|gb|FK979428.1|FK979428
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|60397967|gb|DN230783.1|DN230783
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195341|gb|FK979449.1|FK979449
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192947|gb|FK979443.1|FK979443
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATRAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190538|gb|FK979424.1|FK979424
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|148934074|gb|EC878088.2|EC878088
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|149096066|gb|EE181748.2|EE181748
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|67024539|gb|CO453288.1|CO453288
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211197749|gb|FK979464.1|FK979464
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCA--AAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190541|gb|FK979427.1|FK979427
EST:     CAGGGAATCAAAATGGAGACGTTGCAGNGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
EST: gi|31910377|gb|CD651393.1|CD651393
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTCGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|71331060|gb|DR802360.1|DR802360
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190545|gb|FK979431.1|FK979431
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTTCTC
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTT-CTC
EST: gi|148969028|gb|EE019736.2|EE019736
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929351|gb|CF034163.1|CF034163
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195351|gb|FK979459.1|FK979459
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|149076619|gb|EE165258.2|EE165258
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTC
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTC
EST: gi|211322184|gb|FK979481.1|FK979481
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|22472597|gb|BU037077.1|BU037077
EST:     TACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: TACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211322188|gb|FK979485.1|FK979485
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211322181|gb|FK979478.1|FK979478
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGT
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGT
EST: gi|211195352|gb|FK979460.1|FK979460
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|13237071|gb|BG355085.1|BG355085
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195340|gb|FK979448.1|FK979448
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCT
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCT
EST: gi|211192936|gb|FK979432.1|FK979432
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929206|gb|CF034018.1|CF034018
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192938|gb|FK979434.1|FK979434
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
EST: gi|211197754|gb|FK979469.1|FK979469
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTTGA-CTTTGATGCCTACGGGTTCTC
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTT-GAACTTTGATGCCTACCGGTTCTC
EST: gi|148931885|gb|EC877350.2|EC877350
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|148931067|gb|EC873678.2|EC873678
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928537|gb|CF033349.1|CF033349
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAG-TTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190539|gb|FK979425.1|FK979425
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|6564100|gb|AW231722.1|AW231722
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192950|gb|FK979446.1|FK979446
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195346|gb|FK979454.1|FK979454
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         -A---CGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192937|gb|FK979433.1|FK979433
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTT-GAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|28909524|gb|CB330973.1|CB330973
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929111|gb|CF033923.1|CF033923
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32848750|gb|CD988431.1|CD988431
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32837200|gb|CD976878.1|CD976878
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|148996928|gb|EE035737.2|EE035737
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|67018030|gb|CO446779.1|CO446779
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929433|gb|CF034245.1|CF034245
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929642|gb|CF034454.1|CF034454
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928848|gb|CF033660.1|CF033660
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32847307|gb|CD986988.1|CD986988
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32837471|gb|CD977149.1|CD977149
EST:     CAGGGAATCAAAATGCAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929091|gb|CF033903.1|CF033903
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32849499|gb|CD989180.1|CD989180
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCCCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928412|gb|CF033224.1|CF033224
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|101393334|gb|EB818598.1|EB818598
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
                              cgttaac  putative branch site (score: 3)
                                    ctcttttgttctgctt  CT-rich tract
                                       ttttgtt  TA-rich tract