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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG

Basic information

species Zea mays
transcript GRMZM2G118003_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g49600.2 (Oryza sativa), 3'ss of exon 2
----gtacttaactatgcgaagcaaataaaccg-atctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
    |  || || ||||||   | ||        ||      | ||       |   |    |  ||  |     |     |   |||||   |||||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
aaatgctctaaaatatgcgtgtccaaggtcttacattacatgtaagtgtttccattctccattatctaaaaaaaaagtgtatccattctggaacaggaagATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g49600.3 (Oryza sativa), 3'ss of exon 2
--------gtacttaactatgcgaagcaaataaaccg-atctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
        |  || || ||||||   | ||        ||      | ||       |   |    |  ||  |     |     |   |||||   |||||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
ctgtaaatgctctaaaatatgcgtgtccaaggtcttacattacatgtaagtgtttccattctccattatctaaaaaaaaagtgtatccattctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCAATCTCATGGTCCAGGATCTTCCCAG

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 2
-----gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactc-------ttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
       | || | |||     | ||||    |  | ||   || ||   |   |    |  ||   || |  |   ||         | |||  |    ||||||||  | |||||||||   ||  |||| |||||||||||||||||||||||||| |||||||| || || ||  
gaagtacatttgattatatt--gtaaatgt-tcattatgtattgtgattgagttgtccctcttgttgttcttctctgctggaataaactctgtaatttgacagGAAGATATAGATCTCATGGCCAGCCTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G11310.1 (Glycine max), 3'ss of exon 2
---------gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
             || | ||||    |  | | ||  |  |               |   |  | |  |  |    | |||    | | |  |    ||||||||  | |||||||||   || ||||| |||||||||||||||||||||||||| |||||||| || || ||  
tatattgtaaatgttcattatgtattgtgattgaattgtacctcttgttcttctctgctggaataaaactatgtgagctaaagtatgtttaatttgacagGAAGATATAGATCTCATGGCCAGCTTGAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA

upper sequence: GRMZM2G118003_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 2
-------------gtacttaactatgcgaagcaaataaaccgatctgggctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgctt-cagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
              |  |||| |||   |   ||        || |  ||   |   |||     ||||| |   | || |  ||||  |  | | || |  ||||||||  | || || ||||| ||| | || ||||| || ||||| ||||||||||||||||||||||| ||||| |
gtttttaagtcttttttttaattatat-atataatctgtttcatttttgccttgtttcaaat--atttgaagaaataattgaaaactact--gatgtgttaacagGAAGATATAGACCTGATGAAGAGTCTTAATTTTGAAGCATACCGCTTCTCAATCTCATGGTCCAGGATTTTCCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211195344|gb|FK979452.1|FK979452
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32848755|gb|CD988436.1|CD988436
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211322178|gb|FK979475.1|FK979475
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928641|gb|CF033453.1|CF033453
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|6826935|gb|AW330578.1|AW330578
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195347|gb|FK979455.1|FK979455
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|109179241|gb|EC379886.1|EC379886
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192948|gb|FK979444.1|FK979444
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192942|gb|FK979438.1|FK979438
EST:     CAGGGAATCAAAATGGAGACGTTGCAATGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190542|gb|FK979428.1|FK979428
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|60397967|gb|DN230783.1|DN230783
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195341|gb|FK979449.1|FK979449
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192947|gb|FK979443.1|FK979443
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATRAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190538|gb|FK979424.1|FK979424
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|148934074|gb|EC878088.2|EC878088
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|149096066|gb|EE181748.2|EE181748
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|67024539|gb|CO453288.1|CO453288
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211197749|gb|FK979464.1|FK979464
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCA--AAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190541|gb|FK979427.1|FK979427
EST:     CAGGGAATCAAAATGGAGACGTTGCAGNGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
EST: gi|31910377|gb|CD651393.1|CD651393
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTCGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|71331060|gb|DR802360.1|DR802360
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190545|gb|FK979431.1|FK979431
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTTCTC
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTT-CTC
EST: gi|148969028|gb|EE019736.2|EE019736
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929351|gb|CF034163.1|CF034163
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195351|gb|FK979459.1|FK979459
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|149076619|gb|EE165258.2|EE165258
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTC
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTC
EST: gi|211322184|gb|FK979481.1|FK979481
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|22472597|gb|BU037077.1|BU037077
EST:     TACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: TACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211322188|gb|FK979485.1|FK979485
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211322181|gb|FK979478.1|FK979478
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGT
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGT
EST: gi|211195352|gb|FK979460.1|FK979460
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|13237071|gb|BG355085.1|BG355085
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195340|gb|FK979448.1|FK979448
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCT
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCT
EST: gi|211192936|gb|FK979432.1|FK979432
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929206|gb|CF034018.1|CF034018
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192938|gb|FK979434.1|FK979434
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATG
EST: gi|211197754|gb|FK979469.1|FK979469
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTTGA-CTTTGATGCCTACGGGTTCTC
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTT-GAACTTTGATGCCTACCGGTTCTC
EST: gi|148931885|gb|EC877350.2|EC877350
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|148931067|gb|EC873678.2|EC873678
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928537|gb|CF033349.1|CF033349
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAG-TTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211190539|gb|FK979425.1|FK979425
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|6564100|gb|AW231722.1|AW231722
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|31353887|gb|CD438244.1|CD438244
EST:     CAGGGAATCAAAATGGAGACGTTGCACTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192950|gb|FK979446.1|FK979446
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211195346|gb|FK979454.1|FK979454
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         -A---CGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|211192937|gb|FK979433.1|FK979433
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTT-GAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|28909524|gb|CB330973.1|CB330973
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929111|gb|CF033923.1|CF033923
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32848750|gb|CD988431.1|CD988431
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32837200|gb|CD976878.1|CD976878
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|148996928|gb|EE035737.2|EE035737
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|67018030|gb|CO446779.1|CO446779
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929433|gb|CF034245.1|CF034245
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929642|gb|CF034454.1|CF034454
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928848|gb|CF033660.1|CF033660
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32847307|gb|CD986988.1|CD986988
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32837471|gb|CD977149.1|CD977149
EST:     CAGGGAATCAAAATGCAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32929091|gb|CF033903.1|CF033903
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32849499|gb|CD989180.1|CD989180
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCCCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|26558653|gb|CA830888.1|CA830888
EST:     TACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: TACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|32928412|gb|CF033224.1|CF033224
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
EST: gi|101393334|gb|EB818598.1|EB818598
EST:     CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAG                         GAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA
genomic: CAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 561

GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 384

GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 144

GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 343

GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGgtacttaact ... tctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagacacaagagagtttgatgcctttatcgttaactcttttgttctgcttcagGAAGACGTCGATCTCATGAAAAGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGG
                              cgttaac  putative branch site (score: 343)
                                    ctcttttgttctgctt  CT-rich tract
                                       ttttgtt  TA-rich tract